CX298120

Overview
NameCX298120
Unique NameCX298120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.062e-21
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E ++ +V AKNALE+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  533 EANRDRVAAKNALESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP70_BRELC (Heat shock 70 kDa protein OS=Bremia lactucae GN=HSP70 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.387e-21
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            E +K ++EAKN LENY+YN+RNT+ DEK+  ++   DKK IED + + I WLD+NQ AE +E+E K KELE I NPI+ KMY
Sbjct:  533 EANKIRIEAKNGLENYSYNLRNTLNDEKLKDQIPEDDKKAIEDKVTETINWLDANQSAEKEEYEGKQKELEGIANPILQKMY 614          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21
Identity = 45/83 (54.22%), Postives = 64/83 (77.11%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E  ++K+ AKNALE+YA+NM++ V DE +  K+  ADKKKI +  ++A+ WL++NQLAE DEF+ K +ELE +CNPII K+YQ
Sbjct:  532 EVQREKIAAKNALESYAFNMKSAVSDEGLKGKISDADKKKILNKCNEALSWLEANQLAEKDEFDHKRRELEQVCNPIITKLYQ 614          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  533 EANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  533 EANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  533 EANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISDQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  533 EANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISDQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP71_PONAB (Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D   + I WLD+N LAE DEFE K KELE +CNPII+ +YQ
Sbjct:  530 EVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQ 612          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D   + I WLD+N LAE DEFE K KELE +CNPII+ +YQ
Sbjct:  530 EVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQ 612          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.090e-21
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  530 EKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612          
The following BLAST results are available for this feature:
BLAST of CX298120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
HSP72_HUMAN1.062e-2155.42Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]
HSP70_BRELC1.387e-2156.10Heat shock 70 kDa protein OS=Bremia lactucae GN=HS... [more]
HS71L_PIG1.812e-2154.22Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HSP72_RAT2.366e-2154.22Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_MOUSE2.366e-2154.22Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HSP72_CAPHI2.366e-2154.22Heat shock-related 70 kDa protein 2 OS=Capra hircu... [more]
HSP72_BOVIN2.366e-2154.22Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]
HSP71_PONAB2.366e-2155.42Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSP... [more]
HSP71_HUMAN2.366e-2155.42Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN... [more]
HSP7C_SAGOE3.090e-2154.22Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]

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Properties
Property NameValue
Genbank descriptionC06008G09SK RindPdig24 Citrus clementina cDNA clone C06008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298120 ID=CX298120; Name=CX298120; organism=Citrus clementina; type=EST; length=607bp
CGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGAAAACTATG
CCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCTCCAAACTT
GATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAGGCAATTCA
ATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGAAGACAAGA
TGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGATGTATCAA
GGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATGCTCCTCCAGC
TGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAGTTGACTAAGCTTCCA
GTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTTTTGACGGTGGGAAAA
CTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGCCTTAGGATGAATATT
AATTTTTCCTTTTCTTTTTATTTTTCAAATTTTACTTTTAATTCGGACCA
ATTTATATAATGAATATTTTTCGGTCCCTAAATATTGTCTCTTTTGCTTG
AAGCCTTATTAATTATGAACAAAAGTCATGCCACCCCATGAACGTTTGTG
GCCCAAA
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