CX298120

Overview
NameCX298120
Unique NameCX298120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.174e-20
Identity = 44/83 (53.01%), Postives = 63/83 (75.90%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E  ++K+ AKNALE+YA+NM++ V DE +  K+  +DKKKI D   + + WL++NQLAE +EF+ K KELE++CNPII K+YQ
Sbjct:  532 EGQREKIAAKNALESYAFNMKSAVGDEGLKDKISESDKKKILDKCSEVLSWLEANQLAEKEEFDHKRKELENMCNPIITKLYQ 614          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.174e-20
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E  ++K+ AKNALE+YA+NM++ V DE +  K+  +DKKKI    ++ + WL++NQLAE DEF+ K KELE +CNPII K+YQ
Sbjct:  532 EVQREKIAAKNALESYAFNMKSAVSDEGLQGKISESDKKKILSKCNEVLLWLEANQLAEKDEFDHKRKELEQVCNPIITKLYQ 614          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: MAG29_DERFA (Allergen MAG29 (Fragment) OS=Dermatophagoides farinae GN=MAG29 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            ++ + ++ AKN+LE YA+ M+ T+ +E I SK+   D+KKI D +D+ ++WLD+N LAE DEFE + KELES+CNPII K+YQ
Sbjct:   19 DKQRDRIAAKNSLEGYAFQMKATLDEEAIKSKVSEEDRKKILDKVDEVLKWLDANALAEKDEFEHQRKELESVCNPIITKLYQ 101          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP70_LEIDO (Heat shock 70 kDa protein OS=Leishmania donovani GN=HSP70 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            + +VEAKN LENYAY+M+NT+ D  +  KLD +DK  +   ID  ++WL SNQ A  +E+E K KELES+CNPI+ KMYQ
Sbjct:  535 RDRVEAKNGLENYAYSMKNTLGDSNVSGKLDDSDKATLNKEIDVTLEWLSSNQEATKEEYEHKQKELESVCNPIMTKMYQ 614          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.616e-20
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E  ++K+ AKNALE+YA+NM++ V DE +  K+  +DK KI D  ++ + WL+ NQLAE DEF+ K KELE +CNPII K+YQ
Sbjct:  532 EVQREKIAAKNALESYAFNMKSVVSDEGLKGKISESDKNKILDKCNELLSWLEVNQLAEKDEFDHKRKELEQMCNPIITKLYQ 614          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.616e-20
Identity = 39/81 (48.15%), Postives = 67/81 (82.72%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            K++++A+N LE Y YNM+NTV D +K+  KL+  +K+K+E+A+ +A++WLD NQ AE +++E+K+KE+E++CNPI++ +YQ
Sbjct:  562 KERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQ 642          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.616e-20
Identity = 39/81 (48.15%), Postives = 67/81 (82.72%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            K++++A+N LE Y YNM+NTV D +K+  KL+  +K+K+E+A+ +A++WLD NQ AE +++E+K+KE+E++CNPI++ +YQ
Sbjct:  562 KERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVYQ 642          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP70_LEIAM (Heat shock 70 kDa protein OS=Leishmania amazonensis GN=HSP70 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.417e-20
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 2
Query:   17 KVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            +VEAKN LENYAY+M+NT+ D  +  KLD  DK  +   I+ A++WL SNQ A  +E+E K KELE++CNPI+ KMYQ
Sbjct:  538 RVEAKNGLENYAYSMKNTLGDSNVSGKLDDTDKSTLNKEIEAALEWLSSNQEATKEEYEHKQKELENVCNPIMTKMYQ 615          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP70_NEUCR (Heat shock 70 kDa protein OS=Neurospora crassa GN=hsps-1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.463e-20
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            E   K+V AKN LE+YAY++RNT+ D K+  KLD ADK+K++  ID+ + WLD NQ A  +E+E++ KELE+I NPI+ K Y
Sbjct:  529 EAEAKRVAAKNGLESYAYSLRNTLSDSKVDEKLDAADKEKLKSEIDKIVAWLDENQQATREEYEERQKELEAIANPIMMKFY 610          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP70_PYRSA (Heat shock 70 kDa protein OS=Pyrenomonas salina GN=HSP70 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.828e-20
Identity = 42/83 (50.60%), Postives = 66/83 (79.52%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+  KK+EAKN+LENYAYN+RNTV+DEK+  K+   DKK IE+ + + ++++++N+  E +E+E+K KEL++  NPII+K+YQ
Sbjct:  536 EKLDKKLEAKNSLENYAYNIRNTVRDEKLKEKIQEEDKKSIEEKVKEVLEFIETNEDLEKEEYEEKEKELKNFANPIISKLYQ 618          
The following BLAST results are available for this feature:
BLAST of CX298120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
HS71L_RAT1.174e-2053.01Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_BOVIN1.174e-2053.01Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
MAG29_DERFA1.534e-2051.81Allergen MAG29 (Fragment) OS=Dermatophagoides fari... [more]
HSP70_LEIDO1.534e-2055.00Heat shock 70 kDa protein OS=Leishmania donovani G... [more]
HS71L_HUMAN2.616e-2053.01Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]
BIP3_MAIZE2.616e-2048.15Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP2_MAIZE2.616e-2048.15Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
HSP70_LEIAM3.417e-2055.13Heat shock 70 kDa protein OS=Leishmania amazonensi... [more]
HSP70_NEUCR4.463e-2052.44Heat shock 70 kDa protein OS=Neurospora crassa GN=... [more]
HSP70_PYRSA5.828e-2050.60Heat shock 70 kDa protein OS=Pyrenomonas salina GN... [more]

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Properties
Property NameValue
Genbank descriptionC06008G09SK RindPdig24 Citrus clementina cDNA clone C06008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298120 ID=CX298120; Name=CX298120; organism=Citrus clementina; type=EST; length=607bp
CGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGAAAACTATG
CCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCTCCAAACTT
GATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAGGCAATTCA
ATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGAAGACAAGA
TGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGATGTATCAA
GGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATGCTCCTCCAGC
TGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAGTTGACTAAGCTTCCA
GTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTTTTGACGGTGGGAAAA
CTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGCCTTAGGATGAATATT
AATTTTTCCTTTTCTTTTTATTTTTCAAATTTTACTTTTAATTCGGACCA
ATTTATATAATGAATATTTTTCGGTCCCTAAATATTGTCTCTTTTGCTTG
AAGCCTTATTAATTATGAACAAAAGTCATGCCACCCCATGAACGTTTGTG
GCCCAAA
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