CX298120

Overview
NameCX298120
Unique NameCX298120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: BIP3_TOBAC (Luminal-binding protein 3 (Fragment) OS=Nicotiana tabacum GN=BIP3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.298e-19
Identity = 39/81 (48.15%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            K++++A+N LE Y YNM+N + D +K+  KL+  +K+KIE A+ +A++WLD NQ AE +++E+K+KE+E++CNPII  +YQ
Sbjct:   68 KERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 148          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            + KV +KN+LE+YA+NM++TV+DEK+  K+   DK KI +  ++ I WLD NQ AE +E+E   KELE +CNPII K+YQ
Sbjct:  533 RDKVSSKNSLESYAFNMKSTVEDEKLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQ 612          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E ++ +V AKN+LE+Y YNM+ TV+DEK+  K+   DK+K+ D   + I  LD NQ+AE +E+E K KELE +CNPI+ K+YQ
Sbjct:  533 EANRDRVGAKNSLESYTYNMKQTVEDEKLKGKISDQDKQKVLDKCQEVISSLDRNQMAEKEEYEHKQKELEKLCNPIVTKLYQ 615          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HS7C2_DICDI (Heat shock cognate 70 kDa protein 2 OS=Dictyostelium discoideum GN=hspE-1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 41/82 (50.00%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 247
            E  ++ VE+KN LENYAY +R+T+KD+KI +KL   D+K +E+  D+AI WL +N  A  +E+E  MK+LE++C+PII+K+Y
Sbjct:  529 EAQREVVESKNKLENYAYTVRSTIKDDKIAAKLSKEDRKTVEEKSDEAINWLHANDSATKEEYEKAMKDLEAVCSPIISKVY 610          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 41/81 (50.62%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            K+K++A+NALE Y YNM+N V D +K+  KL+  +K+KIE A  +A++WLD NQ +E +E+++K+KE+E++CNPII  +YQ
Sbjct:  564 KEKIDARNALETYVYNMKNQVSDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQ 644          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 40/81 (49.38%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            K++++A+N+LE Y YNM+N + D +K+  KL+  +K+KIE A  +A++WLD NQ AE +++E+K+KE+E+ICNPII  +YQ
Sbjct:  189 KERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAICNPIITAVYQ 269          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 41/81 (50.62%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            K+K++A+NALE Y YNM+N V D +K+  KL+  +K+KIE A  +A++WLD NQ +E +E+++K+KE+E++CNPII  +YQ
Sbjct:  564 KEKIDARNALETYVYNMKNQVNDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQ 644          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 39/81 (48.15%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            K++++A+N+LE Y YNMRN + D +K+  KL+  +K+KIE A  +A++WLD NQ AE +++++K+KE+E++CNPII  +YQ
Sbjct:  565 KERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQ 645          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: BIP2_TOBAC (Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 39/81 (48.15%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   11 KKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            K++++A+N+LE Y YNM+N + D +K+  KL+  +K+KIE A  +A++WLD NQ AE +++E+K+KE+E++CNPII  +YQ
Sbjct:  189 KERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 269          
BLAST of CX298120 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 2
Query:    2 EEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 250
            E+ + KV +KN+L++YA+NM+ TV+DEK+  K+   D + I D  ++ I WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  530 EKQRDKVSSKNSLDSYAFNMKATVEDEKLPGKILDEDHQNILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612          
The following BLAST results are available for this feature:
BLAST of CX298120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
BIP3_TOBAC1.298e-1948.15Luminal-binding protein 3 (Fragment) OS=Nicotiana ... [more]
HSP70_ONCMY2.215e-1952.50Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HSP70_CHICK2.215e-1950.60Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]
HS7C2_DICDI2.215e-1950.00Heat shock cognate 70 kDa protein 2 OS=Dictyosteli... [more]
BIP2_ARATH2.215e-1950.62Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP1_TOBAC2.215e-1949.38Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
BIP1_ARATH2.215e-1950.62Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
BIP5_TOBAC2.893e-1948.15Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
BIP2_TOBAC2.893e-1948.15Luminal-binding protein 2 (Fragment) OS=Nicotiana ... [more]
HSP7C_CHICK4.934e-1950.60Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]

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Properties
Property NameValue
Genbank descriptionC06008G09SK RindPdig24 Citrus clementina cDNA clone C06008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298120 ID=CX298120; Name=CX298120; organism=Citrus clementina; type=EST; length=607bp
CGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGAAAACTATG
CCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCTCCAAACTT
GATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAGGCAATTCA
ATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGAAGACAAGA
TGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGATGTATCAA
GGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATGCTCCTCCAGC
TGGTGGCAGTGCCGCCGGTCCCAAGATTGAGGAAGTTGACTAAGCTTCCA
GTTTTATTTTGTTGTGTTTGTGGGAGGTCGGTTTTTTGACGGTGGGAAAA
CTGGACGTTTGGTTTTTATCTTATGTTGTTTTAGCCTTAGGATGAATATT
AATTTTTCCTTTTCTTTTTATTTTTCAAATTTTACTTTTAATTCGGACCA
ATTTATATAATGAATATTTTTCGGTCCCTAAATATTGTCTCTTTTGCTTG
AAGCCTTATTAATTATGAACAAAAGTCATGCCACCCCATGAACGTTTGTG
GCCCAAA
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