CX298127

Overview
NameCX298127
Unique NameCX298127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYTM_SOLTU (Multicystatin OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 3
Query:   60 RLTQKTMATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA*LV 386
            +L    +A +GG+ +V    NN E  +LARFA+  +NKK+N +L+F            G +Y ITL A++ G+KK++E K+W K W  FK++ EF  V    + T  ++
Sbjct:  184 KLVGDDIAKLGGITDVPFP-NNPEFQDLARFAIQVYNKKENVHLEFVENLNVKQQVVAGMMYYITLAAIDAGKKKIYETKIWVKEWEDFKKVVEFKLVGDDSAKTGGII 291          

HSP 2 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 3
Query:   60 RLTQKTMATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEF 344
            +L     A +GG+  V    NN E  +LARFAV ++NKK+N++L+F            G LY ITL A++ G+KK++EAK+W K W  FK++ EF
Sbjct:  467 KLVGDDSAKLGGIINVPFP-NNPEFQDLARFAVQDYNKKENAHLEFVENLNVKEQLVAGMLYYITLVAIDAGKKKIYEAKIWVKEWENFKKVIEF 560          

HSP 3 Score: 77.7962 bits (190), Expect = 5.833e-14
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   81 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA*LVV 389
            A +GG  +V    NN E  +LARFAV ++NKK+N++L++            G +Y ITL A + G+KK++EAK+W K W  FK++ EF  V    +    +++
Sbjct:  568 AIIGGFTDVPFP-NNPEFQDLARFAVQDYNKKENAHLEYVENLNVKEQLVAGMIYYITLVATDAGKKKIYEAKIWVKEWEDFKKVVEFKLVGDDSAKPGGIII 669          

HSP 4 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 3
Query:   87 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPV 353
            +GG  EV    N+ E  +L RFAV ++NK QN++L+F            G LY IT  A +GG+KK++E K+W K W  FK++ EF  V
Sbjct:  382 LGGFTEVPFP-NSPEFQDLTRFAVHQYNKDQNAHLEFVENLNVKKQVVAGMLYYITFAATDGGKKKIYETKIWVKVWENFKKVVEFKLV 469          

HSP 5 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 3
Query:   90 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAV-EGGQKKLFEAKVWEKPWMQFKELKEFNPV 353
            GG+  V    NN +   LARFA+ ++NKKQN++L+F            G +Y ITL A  + G+KK+++AK+W K W  FK++ EF  V
Sbjct:   99 GGIVNVP-NPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKAKIWVKEWEDFKKVVEFKLV 186          

HSP 6 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 3
Query:   60 RLTQKTMATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPV 353
            +L     A  GG+  V    N+ E  +LARFAV ++N  QN++L+F            G +Y ITL A + G KK +EAK+W K W  FK++ +F  V
Sbjct:  278 KLVGDDSAKTGGIINVP-NPNSPEFQDLARFAVQDYNNTQNAHLEFVENLNVKEQLVSGMMYYITLAATDAGNKKEYEAKIWVKEWEDFKKVIDFKLV 374          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYT3_ORYSJ (Cysteine proteinase inhibitor 3 OS=Oryza sativa subsp. japonica GN=Os05g0409300 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  129 EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA 377
            E  + ARFAV E+NK Q + L+F            GTL+D+ LE V+ G+K L+ AKVW KPW+ FK + EF  V  S S +A
Sbjct:   59 EAEDAARFAVAEYNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEFRHVGDSQSQSA 141          
BLAST of CX298127 vs. ExPASy Swiss-Prot
Match: CYT2_ORYSJ (Cysteine proteinase inhibitor 2 OS=Oryza sativa subsp. japonica GN=Os05g0494200 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 3
Query:   87 VGGVREVEATANNQ-EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVE-GGQKKLFEAKVWEKPWMQFKELKEFNPV 353
            VGG+ +  A   N    V LARFAV EHN K N+ L+             G ++ +T+E  E GG  KL+EAKVWE+ W  FK+L++F P+
Sbjct:   56 VGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELERVVKVRQQVVGGFMHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDFKPL 146          
The following BLAST results are available for this feature:
BLAST of CX298127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYTM_SOLTU2.618e-1435.78Multicystatin OS=Solanum tuberosum PE=2 SV=1[more]
CYT3_ORYSJ1.299e-1344.58Cysteine proteinase inhibitor 3 OS=Oryza sativa su... [more]
CYT2_ORYSJ4.180e-1241.76Cysteine proteinase inhibitor 2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC06008H04SK RindPdig24 Citrus clementina cDNA clone C06008H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298127 ID=CX298127; Name=CX298127; organism=Citrus clementina; type=EST; length=679bp
AGGCCATAAGGAAAGTAGAAAACACAACAACTTAAAATCTTTCTCATCGC
TTTATCATCAGACTTACGCAGAAAACAATGGCTACAGTAGGCGGTGTTCG
TGAGGTTGAAGCAACAGCCAACAATCAGGAGATCGTTAATCTCGCACGCT
TCGCTGTGGATGAGCATAACAAGAAGCAGAATTCAAATCTGCAATTTGTA
AAAGTTGTAAGTGCGAAGCAGCAAGTGGTTTCAGGGACTCTGTACGACAT
CACCTTGGAGGCTGTTGAAGGAGGTCAGAAGAAACTTTTTGAAGCTAAGG
TCTGGGAGAAGCCTTGGATGCAATTCAAGGAGTTGAAAGAATTCAATCCT
GTTGCTCAGTCTCACTCCTCAACCGCTTAGCTTGTGGTGACTGAAGATGA
CATCTACGTGTAGCTTGCAATGGATCAAACAAAGAGACAGTATCAATAAG
AATGGAGCTATAACCATGTTCAGAATATAAAAATAAATGTAACCGGATTT
ATGAGTTTGGTTCTTTAATCTTTTGCAAGTTATGTGTCGATTATTTATGG
TAGTAGCTGCAACTCAGCGCAACTTTTATAACTGTGTGAAAAATAATTGA
AATGACCTTTGGTCTGTAATATATATACAAGATTAATCTCTTTCTACTTA
AAAAAAAAAAAAAAAACTCGAGGGGGGGG
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