CX298129

Overview
NameCX298129
Unique NameCX298129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_PROMT (Protein grpE OS=Prochlorococcus marinus (strain NATL2A) GN=grpE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  290 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETV 598
            D E ++  L +E     ++ +RI+ADFDNFRKR  +++  L        +  +L ++DNFERA+ Q+  + E  + ++ SYQ +YKQLVE+L +LGV P+  V
Sbjct:   75 DTEARLQQLEKEHETLNSQYMRIAADFDNFRKRQTRDQDDLKIQLTCTTLSEILPIVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVEVLKNLGVAPMRVV 177          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_PROM1 (Protein grpE OS=Prochlorococcus marinus (strain NATL1A) GN=grpE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  290 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETV 598
            D E ++  L +E     ++ +RI+ADFDNFRKR  +++  L        +  +L ++DNFERA+ Q+  + E  + ++ SYQ +YKQLVE+L +LGV P+  V
Sbjct:   75 DTEARLQQLEKEHETLNSQYMRIAADFDNFRKRQTRDQDDLKIQLTCTTLSEILPIVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVEVLKNLGVAPMRVV 177          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_SYNS9 (Protein grpE OS=Synechococcus sp. (strain CC9902) GN=grpE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 41/103 (39.81%), Postives = 67/103 (65.05%), Query Frame = 2
Query:  293 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVG 601
            LE+++ +L +E  A +++ +RI+ADFDNFRKR  +++  L        +  +L V+DNFERA+ Q+  + E  + ++ SYQ +YKQLV++L   GV  +E VG
Sbjct:   54 LEQELNSLKQEHEAVQSQYMRIAADFDNFRKRQARDQDDLRQQLVCSTLTEILPVVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVG 156          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_PROMP (Protein grpE OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=grpE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 44/118 (37.29%), Postives = 71/118 (60.17%), Query Frame = 2
Query:  275 EDEKI---DLERKVVN-------LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETV 598
            +DE I   DL+  + N       L +E    +++ +RI+ADFDNFRKR  +++  L      + +  +L ++DNFERA+ Q+K ++E  + ++ SYQ +YKQLVE+L   GV P+  V
Sbjct:   43 DDENIYAEDLKNTITNNDARLEQLEKEHETLKSQYVRIAADFDNFRKRQSRDQDDLKVQLVSKALTAILPIVDNFERARQQLKPESEEAQTLHRSYQGLYKQLVEVLKQQGVSPMRVV 160          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_SYNPX (Protein grpE OS=Synechococcus sp. (strain WH8102) GN=grpE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  293 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVG 601
            LE ++  L +E    +++ +RI+ADFDNFRKR  +++  +        +  +L V+DNFERA+ Q+  ++E  + ++ SYQ +YKQLV++L   GV  +E VG
Sbjct:   49 LEHELQTLKQEHETLQSQYMRIAADFDNFRKRQSRDQEDIRQQLVCSTLSEILPVVDNFERARQQLNPESEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVG 151          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_SYNSC (Protein grpE OS=Synechococcus sp. (strain CC9605) GN=grpE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  278 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVG 601
            D    LE+++  L +E     ++ +RI+ADFDNFRKR  +++  +        +  +L V+DNFERA+ Q+  + E  + ++ SYQ +YKQLVE+L   GV  ++ VG
Sbjct:   45 DRMQQLEQELSALKQEHDTLNSQYMRIAADFDNFRKRQSRDQDDMRKQLVCSTLTEILPVVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVEVLKQQGVARMDVVG 152          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_CLOPH (Protein grpE OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=grpE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  206 YKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVG 601
            Y+E  AS D +K        KSF  +K   ++K     E++     R++R  A+F+NFRKRTEKE+  +      +++ER+L V+DNFER    + V+ E +       + IYKQLV  L + GV  +E  G
Sbjct:   56 YEEDTASEDGSKEK------KSFFKKKEKKDKK----DEKIDELTDRLMRNMAEFENFRKRTEKEKTQMFEVGAKDIIERILPVIDNFERGLAAVSVE-EKDSAFVQGIEKIYKQLVTTLEAAGVKQIEAAG 176          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_ANOFW (Protein grpE OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=grpE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 45/142 (31.69%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  191 ETLQSYKEAL---ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNP 607
            ETL+ +++A    A  +  +  E EA  +  +DE      K+  L  +L+    R LR+ ADFDN+R+R   +  +        ++  LL +LDNFERA  Q++V+ E  + +    + +Y+ L+E L   GV  +E+VG P
Sbjct:   17 ETLEQHEDAQSEQAPEEQVEQVENEATQQEEKDELTVAYEKIAQLEAKLAETENRFLRLHADFDNYRRRVRLDMEAAEKYRAQSLVSDLLPILDNFERA-LQVQVEDEKAKLLLQGMEMVYRSLIEALKKEGVEAIESVGKP 157          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_BACTR (Protein grpE OS=Bacillus thermoglucosidasius GN=grpE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 2
Query:  164 EEAPTSFIMETLQS--YKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI--------------LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNP 607
            +E+P +   E L+   ++E  A  +  K  E      + +DE  D E+     +EEL+A  A+I              LR+ ADF+NFR+RT +E  +        ++  LL VLDNFERA  +IK + E  + I    + +Y+ +++ L   GV  +E VG P
Sbjct:   16 QESPNAERQEELKENEHQEKNAPEEQEKVREENGRQDAQKDEIGDPEKAKEEQNEELAAANAKIAELEAKIKEMENRYLRLYADFENFRRRTRREMEAAEKYRAQSLVSDLLPVLDNFERA-LKIKAEDEQAKSILQGMEMVYRSVLDALKKEGVEAIEAVGKP 178          
BLAST of CX298129 vs. ExPASy Swiss-Prot
Match: GRPE_CLOAB (Protein grpE OS=Clostridium acetobutylicum GN=grpE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 43/147 (29.25%), Postives = 75/147 (51.02%), Query Frame = 2
Query:  164 EEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE-EKINNSYQSIYKQLVEILGSLGVVPVETVG 601
            E+  T    E ++    +  S+ + ++   E   ++  +E + L+ +   L  EL A + R+LR+SA+++N+R RT KE+  + T+A  +V+  +L  LDN ERA       TEG  E I    + + KQ    L  LG+  + + G
Sbjct:   12 EDEETIASQEEIEVEGNSEESSKEEESNNSEISDENLSEENLKLKDENEKLKNELDAAKDRLLRLSAEYENYRNRTAKEKEGIYTDACSDVINEMLPTLDNLERA-----ASTEGSAEDIKKGVEMVVKQFKNSLSKLGIEEIPSEG 153          
The following BLAST results are available for this feature:
BLAST of CX298129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GRPE_PROMT8.768e-1638.83Protein grpE OS=Prochlorococcus marinus (strain NA... [more]
GRPE_PROM18.768e-1638.83Protein grpE OS=Prochlorococcus marinus (strain NA... [more]
GRPE_SYNS91.496e-1539.81Protein grpE OS=Synechococcus sp. (strain CC9902) ... [more]
GRPE_PROMP1.496e-1537.29Protein grpE OS=Prochlorococcus marinus subsp. pas... [more]
GRPE_SYNPX2.551e-1537.86Protein grpE OS=Synechococcus sp. (strain WH8102) ... [more]
GRPE_SYNSC9.694e-1537.04Protein grpE OS=Synechococcus sp. (strain CC9605) ... [more]
GRPE_CLOPH3.119e-1335.61Protein grpE OS=Clostridium phytofermentans (strai... [more]
GRPE_ANOFW3.119e-1331.69Protein grpE OS=Anoxybacillus flavithermus (strain... [more]
GRPE_BACTR1.003e-1131.10Protein grpE OS=Bacillus thermoglucosidasius GN=gr... [more]
GRPE_CLOAB1.310e-1129.25Protein grpE OS=Clostridium acetobutylicum GN=grpE... [more]

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Properties
Property NameValue
Genbank descriptionC06008H06SK RindPdig24 Citrus clementina cDNA clone C06008H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298129 ID=CX298129; Name=CX298129; organism=Citrus clementina; type=EST; length=613bp
GTTCGTAAAGTTCTCTCCTTTAGCTTCAACTGGAGAAACTGAAACCCAAG
AGGAAATTCAGGAACCCCAAATTGAGGAATCTTCCGATGGTGCTGTTGGC
ATTGAAGATGGCACTAGTGACGATGATAGCTCTGGAGCTACTAGTGATGA
CACCTCAGATGCTGAGGAAGCACCTACTTCATTCATTATGGAAACACTCC
AATCATACAAAGAAGCTTTGGCCAGTAATGACGATACCAAAGCTGCTGAA
ATAGAGGCTTTATTAAAATCCTTTGAAGATGAGAAAATTGATCTTGAGAG
GAAAGTTGTTAACTTGTCTGAAGAATTGTCAGCTGAGAGGGCTCGTATTC
TTAGGATCAGTGCTGACTTTGACAATTTTCGTAAGAGAACGGAGAAGGAA
CGCCTTTCACTGGTAACAAATGCTCAAGGAGAAGTCATGGAGAGATTGTT
GCAAGTTTTGGATAATTTTGAGAGAGCTAAAACTCAAATTAAGGTGCAGA
CCGAGGGAGAGGAGAAAATAAACAACAGCTATCAGAGCATATATAAGCAA
TTAGTGGAAATCCTAGGATCACTTGGTGTTGTTCCTGTGGAGACGGTTGG
GAATCCCCTTTGA
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