CX298228

Overview
NameCX298228
Unique NameCX298228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length310
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK1_MOUSE (S-adenosylmethionine synthetase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.180e-30
Identity = 57/102 (55.88%), Postives = 79/102 (77.45%), Query Frame = 3
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDET E MPL+ VLA +L  ++ ++R++G  PWLRPD KTQVTV+Y  +NGA++PVR+HT++IS QH+E +T + +   LKE VIK V+P KYLDE T++H
Sbjct:  143 ATDETEECMPLTIVLAHKLNTRIADLRRSGVLPWLRPDSKTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEAMQEALKEQVIKAVVPAKYLDEDTVYH 244          
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.728e-29
Identity = 57/102 (55.88%), Postives = 81/102 (79.41%), Query Frame = 3
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDET E MPL+ +LA +L A++ E+R++G  PWL+PD KTQVTV+Y  +NGA++P+RVHTV+IS QH+E +T +++   LKE VI+ V+P +YLDE TI+H
Sbjct:  143 ATDETEECMPLTIMLAHRLNARMAELRRSGQLPWLQPDSKTQVTVQYTQDNGAVIPMRVHTVVISVQHNEDITLEDMRRALKEQVIRAVVPARYLDEDTIYH 244          
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.354e-28
Identity = 55/102 (53.92%), Postives = 77/102 (75.49%), Query Frame = 3
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPE +PL+ +LA QL A + + R++G+ PWLRPD KTQVT+EY ++ GA+VP +V TV++S QH E +T +E+  ++ E +IK  IP KYLDE T+FH
Sbjct:  138 ATDETPELLPLTLLLAHQLNANMAKARRDGSLPWLRPDTKTQVTIEYEHDGGAVVPKKVKTVVVSAQHSEDITTEELRKEILEKIIKTTIPAKYLDEDTVFH 239          
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.146e-28
Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = 3
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPE  PL+ + A +L A ++  R++G+ PWLRPD KTQVT+EY ++NGA+VP+RV TV++S QH   +T +E+  ++ E +IK  IP KYLDEKT++H
Sbjct:  141 ATDETPELFPLTLLFAHKLNAAMSAARRDGSLPWLRPDTKTQVTIEYKHDNGAVVPLRVDTVVVSAQHAPEITTEELRKEILEKIIKTTIPAKYLDEKTVYH 242          
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.689e-27
Identity = 50/102 (49.02%), Postives = 79/102 (77.45%), Query Frame = 3
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDETPE +PL+ +LA +L A ++  R++G+ PWLRPD KTQVT+EY  ENGA++P RV T+++S QH ++++ +++ +++ E +IKP +P   LDEKT++H
Sbjct:  129 ATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHLLDEKTVYH 230          
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.655e-26
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 3
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDET E MPL+ +L+ +L  KL E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ D++  +L E VIK VIP   +D+KTI+H
Sbjct:  130 ATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYH 231          
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.655e-26
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 3
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDET E MPL+ +L+ +L  KL E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ D++  +L E VIK VIP   +D+KTI+H
Sbjct:  130 ATDETEEAMPLTLLLSHKLNRKLHELRRSGELEWVRPDSKTQVTIEYASEGGACVPLRVHTVVISTQHSPDISLDDLRKELIEKVIKAVIPANLIDDKTIYH 231          
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.823e-26
Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = 3
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            ATDET E MPL+ +L+ ++ A+L ++R+NGT PW+RPD K+QVT+EY + +GA +P+RVHTV++STQH   VT +++   +   VIK VIP   LDE T+FH
Sbjct:  129 ATDETEETMPLTLILSHKINAELHKLRRNGTLPWVRPDSKSQVTIEYESRHGATIPLRVHTVVVSTQHSPDVTLEKLRETILADVIKKVIPASLLDESTVFH 230          
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.816e-26
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            AT+ET EFMP    +A +L  +LTEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T ++
Sbjct:  135 ATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYY 232          
BLAST of CX298228 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.816e-26
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 3
Query:    3 ATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFH 308
            AT+ET EFMP    +A +L  +LTEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T ++
Sbjct:  135 ATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYY 232          
The following BLAST results are available for this feature:
BLAST of CX298228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_MOUSE7.180e-3055.88S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_BOVIN2.728e-2955.88S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_ASCIM1.354e-2853.92S-adenosylmethionine synthetase OS=Ascobolus immer... [more]
METK_NEUCR5.146e-2852.94S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK_SCHPO5.689e-2749.02S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK4_CAEEL1.655e-2654.90Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]
METK3_CAEEL1.655e-2654.90Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]
METK1_CAEEL2.823e-2651.96Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]
METK_CLOPS4.816e-2657.84S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP14.816e-2657.84S-adenosylmethionine synthetase OS=Clostridium per... [more]

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Properties
Property NameValue
Genbank descriptionC06010A02SK RindPdig24 Citrus clementina cDNA clone C06010A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298228 ID=CX298228; Name=CX298228; organism=Citrus clementina; type=EST; length=310bp
ATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGTCATGTTCTTGCC
ACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAATGGCACTTGCCC
TTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTGAGTATTACAATG
AGAATGGTGCTATGGTTCCTGTGAGAGTTCACACAGTTTTGATCTCTACT
CAGCATGACGAAACTGTGACTAATGATGAGATCGCTGCTGATTTGAAAGA
GCATGTGATCAAGCCTGTTATTCCTGAGAAGTACCTTGATGAGAAGACTA
TCTTCCATCT
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