CX298255

Overview
NameCX298255
Unique NameCX298255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.700e-17
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            RYA+ D +FV  E     +I FIAWSP TA++R KMIY+S+KDRFKRELDGIQVE  ATD +++ LD  + R N
Sbjct:   64 RYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.027e-14
Identity = 36/73 (49.32%), Postives = 55/73 (75.34%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 233
            RYA++DY+F   +  Q+++I FI W+PD+A ++SKM+Y S+KD  K++L GIQVE+QATD +E+  D   +RA
Sbjct:   62 RYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 3
Query:   15 RYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            RYAVYD+++ +++   ++S++ F  WSPDTA VRSKMIYASSKD  +R L GI  E+Q TD SE+  +   +R +
Sbjct:   73 RYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLERVS 147          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   18 YAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            YAVYD+++  +E+  ++S+I F  WSPDTA VR KM+YASSKD  KR L+G+ +E+Q TD SE+  +   ++ +
Sbjct:   64 YAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEKVS 137          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   18 YAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            YA+YD+++ +     ++S+I F  WSPDTA VRSKM+YASSKD  +R L+G+  ++Q TD SE+  D   +R +
Sbjct:   64 YAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 3
Query:   18 YAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            YA+YD+++    N  ++S+I F  WSPDTA VRSKM+YASSKD  +R L G+  ++Q TD SE+  +   +R +
Sbjct:   64 YAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 30/74 (40.54%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   15 RYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            RYA+YD+++   +  ++++I F +WSPD A+++ KM++ASSKD  ++ L GI  E+Q TD SE+  D   D+ +
Sbjct:   62 RYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDKVS 135          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   15 RYAVYDYDFVTAE-NCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 215
            RYAVYD+++   + + ++++I F  WSPDTA VR+KM+YASSKD  +R L+GI  E+Q TD SE+  +
Sbjct:   63 RYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYE 130          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3
Query:   18 YAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 215
            YAVYD+++    N  ++S+I F  WSPDTA VRSKM+YASSKD  +R L+G+  ++Q TD SE+  +
Sbjct:   64 YAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of CX298255 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.453e-12
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:   15 RYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 236
            +YA+YD+++ +     ++S+I F  WSPDTA ++SKMIYASSKD  +R L+G+  ++Q TD SE+  +   DR +
Sbjct:   63 KYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
The following BLAST results are available for this feature:
BLAST of CX298255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ADF11_ARATH5.700e-1758.11Putative actin-depolymerizing factor 11 OS=Arabido... [more]
ACTP_ACACA2.027e-1449.32Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YARLI7.704e-1449.33Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
COFI_CANGA1.314e-1347.30Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_YEAST2.241e-1345.95Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_ZYGRO1.112e-1245.95Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_USTMA1.112e-1240.54Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_PICAN1.453e-1250.00Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_KLULA1.453e-1250.75Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_DEBHA1.453e-1244.00Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06010C05SK RindPdig24 Citrus clementina cDNA clone C06010C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298255 ID=CX298255; Name=CX298255; organism=Citrus clementina; type=EST; length=594bp
GATTCGGCCGAGGCCGATATGCTGTGTATGATTATGATTTTGTTACCGCA
GAGAACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACAC
TGCAAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCA
AGAGAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCT
GAGATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTCC
TGATCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGGT
GAAATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGATA
TTGGTTTGTTGTTCAAGTTTCACCGATGCAGTATTCTCGTCTAGAACCAT
TTCAGTGGTCTTTATGATGTCTTTATTGATTTGTTGTGGTGTGGAAGTTA
TGGGATGAGTGGCTACTTATAGCTATTTCGTCAAGCTAAGGTGTTTCAAT
TGATGGGGGATGGATAACCCTCTGTTAGGGTTGTTTTTACTTTGAAAATG
GATGTTTCATTTTGAACTTTATAAATGGATGTTTCATTTTTCTT
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