CX298270

Overview
NameCX298270
Unique NameCX298270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.679e-33
Identity = 73/128 (57.03%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  148 SPSSLGSVKGIS--KTFGLKCSP---NFQASMAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            +P SL S+   +    FGLK          +MA YK+K I P GE  E E  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGSVDQSD SFLDD Q+  G++LTC +YPTSD  I++HKEE++
Sbjct:   21 APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 66/96 (68.75%), Postives = 79/96 (82.29%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+KL+ P GE  E E  +D YILD AEE G+DLPYSCRAG+CS+CAGKLVSG +DQSD SFLDD+QME G++LTC +YP SD VI++HKEEEL
Sbjct:    1 ATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 66/98 (67.35%), Postives = 81/98 (82.65%), Query Frame = 1
Query:  226 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            MA +K+ LI    G  +  +  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD  IQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTSNTIDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.982e-33
Identity = 65/96 (67.71%), Postives = 80/96 (83.33%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+K I P GE+ E E  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSG VDQSD SFLDD+Q+  G++LTC +YPTSD  I++HKEEEL
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.982e-33
Identity = 73/135 (54.07%), Postives = 96/135 (71.11%), Query Frame = 1
Query:  127 LSRNLIKSPSSLGSVKGISKT----FGLKCSPNFQAS-MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            +S + +    ++ S+K IS      FGLK   N + + MA YK+KLI P G   EFE  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +GSVDQSDG+FLD++Q  AG++LTC++YP  D  I++HKEEEL
Sbjct:    9 ISTSFLPRKPAVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPI-EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32
Identity = 63/96 (65.62%), Postives = 81/96 (84.38%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+K I P GE+ E E  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGSVDQSD SFLDD+Q+  G++LTC +YPTSD  I++H+EE++
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32
Identity = 62/95 (65.26%), Postives = 79/95 (83.16%), Query Frame = 1
Query:  232 VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            VYK+ L+   G E   +  +D+YILD AE+ G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+E GY+LTC++YPTSD  I++HKEE+L
Sbjct:    4 VYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32
Identity = 64/98 (65.31%), Postives = 81/98 (82.65%), Query Frame = 1
Query:  226 MAVYKIKLI-GPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            MAVYK++LI    G +   E  +D+YILDAAEE G+DLPYSCRAGACSTCAGK+V G+VDQSD SFLDD Q+ AGY+LTC++YP+SDC +++H+EE L
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESL 98          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.778e-32
Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = 1
Query:  226 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            MA YK+ L+ P+G E   +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.778e-32
Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = 1
Query:  226 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            MA YK+ L+ P+G E   +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
The following BLAST results are available for this feature:
BLAST of CX298270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_ARATH4.679e-3357.03Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER_HORVU6.111e-3368.75Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER1_ANAVT6.111e-3367.35Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_BRANA7.982e-3367.71Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER1_SOLLC7.982e-3354.07Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER3_RAPSA1.361e-3265.63Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER1_NOSMU1.361e-3265.26Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_CYAPA1.361e-3265.31Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_THEVL1.778e-3263.92Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB1.778e-3263.92Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]

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Properties
Property NameValue
Genbank descriptionC06010D08SK RindPdig24 Citrus clementina cDNA clone C06010D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298270 ID=CX298270; Name=CX298270; organism=Citrus clementina; type=EST; length=705bp
GAGGCCCCCACCAACCCACTCGCCACCTCGCGCGCTCCGCCGCTCGATCT
CTTGCTTTTCTGGGTAAAGATGTCGACTGTGACACTTAGTGCCCCGTGCA
TGGTTAAAGCTGCACCCAGAAATCAACTATCAAGGAACTTAATCAAGAGC
CCATCCTCACTTGGGTCTGTTAAGGGCATCTCCAAGACCTTTGGCCTGAA
ATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACAAGATTAAGCTGA
TTGGACCTAACGGTGAAGAGCATGAGTTTGAGGCCCAGGAAGACCAGTAC
ATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCG
CGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTG
ACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTAT
CTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGTGATTCAGTCTCA
CAAGGAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCA
AGTATGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGG
ACCTACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGAATCT
TTAAATTTTCATTTGGTTATACTATTACTGGCATTTTGGGAAAAAAAAAA
AAAAA
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