CX298270

Overview
NameCX298270
Unique NameCX298270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.354e-29
Identity = 54/76 (71.05%), Postives = 71/76 (93.42%), Query Frame = 1
Query:  289 EDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            +DQ+ILDAAEE G++LPYSCRAGACSTCAGK++SG++DQS+ SFLDD+QM AG+LLTC++YPTSDC +Q+H E++L
Sbjct:   22 DDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = 1
Query:  235 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            YK+ L  P+G++   E   D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G++DQSD SFLDD+Q   G++LTC++Y TSDC I +H+EE L
Sbjct:    2 YKVTLKTPSGDQ-TIEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESL 94          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 54/96 (56.25%), Postives = 78/96 (81.25%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+ L+ P+G +   +  +D Y+LDAAEEAG+DLPYSCRAG+CS+C GK+ +G+VDQ D SFLDD+Q+EAG++LTC+++P  D  I++HKEE++
Sbjct:    1 ATYKVTLVTPSGTQ-TIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 56/96 (58.33%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A++K+K + P+GE    E  +D++ILDA EEAG+DLPYSCRAGACS+C GKL+ G VDQS+ SFLDD+QM  G++LTC++YP  D  I++H EE+L
Sbjct:    1 AIFKVKFLTPDGER-TIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  235 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            YK  L  P+GE    +  E   ILDAAEEAG DLP+SCRAGACS+C GK+VSGSVDQS+GSFLDD QME G++LTCI+ P SD VI++HKEEEL
Sbjct:    2 YKTVLKTPSGE-FTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.657e-28
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  235 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            YK  L  P+GE    +  E   ILDAAEEAG DLP+SCRAGACS+C GK+VSGSVD+S+GSFLDD QME G++LTCI+ P SD VI++HKEEEL
Sbjct:    2 YKTVLKTPSGE-FTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 57/101 (56.44%), Postives = 78/101 (77.23%), Query Frame = 1
Query:  226 MAVYKIKLIGPNGEEHEFEA----QEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            MA YK+ L+    EEH+ +A     +D ++LDAAEE G++LPYSCRAGACSTCAGK+  G +DQS+ +FLDD+Q+ AG++LTCI+YP SDC +  H+E+EL
Sbjct:    1 MATYKVTLLS---EEHDIDATIDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDEL 98          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 1
Query:  235 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            Y + L  P G E E E  E  Y+LD+AE+ G+DLPYSCRAGACSTCAG +  G+VDQSD SFLDD+Q+   ++LTC++YPTSDC I++H+EE+L
Sbjct:    4 YTVTLSTPGGVE-EIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 54/98 (55.10%), Postives = 77/98 (78.57%), Query Frame = 1
Query:  226 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            MA YK++L     G +   E  +D+YILDAAEEAG+DLP+SCR+G+CS+C G L  G+VDQSD +FLDD+Q+ AG +LTC++YPTS+C I++H+E+ +
Sbjct:    1 MATYKVRLFNAAEGLDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAI 98          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  235 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            +K+ L  P+G++  FE   D YILD AEE G++LPYSCRAG+CS+CAGK+++GS+DQSD +FLDD+Q   GY LTC++YPTSD  I++H E EL
Sbjct:    1 FKVTLDTPDGKK-SFECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
The following BLAST results are available for this feature:
BLAST of CX298270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_BUMFI5.354e-2971.05Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER2_DUNSA6.992e-2961.70Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER1_PHYAM6.992e-2956.25Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_GLEJA9.132e-2958.33Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER1_EQUTE1.193e-2867.02Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER1_EQUAR2.657e-2865.96Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER_ODOSI3.470e-2856.44Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER_RHOPL2.249e-2759.57Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER2_NOSMU5.011e-2755.10Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER_PERBI1.904e-2658.51Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06010D08SK RindPdig24 Citrus clementina cDNA clone C06010D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298270 ID=CX298270; Name=CX298270; organism=Citrus clementina; type=EST; length=705bp
GAGGCCCCCACCAACCCACTCGCCACCTCGCGCGCTCCGCCGCTCGATCT
CTTGCTTTTCTGGGTAAAGATGTCGACTGTGACACTTAGTGCCCCGTGCA
TGGTTAAAGCTGCACCCAGAAATCAACTATCAAGGAACTTAATCAAGAGC
CCATCCTCACTTGGGTCTGTTAAGGGCATCTCCAAGACCTTTGGCCTGAA
ATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACAAGATTAAGCTGA
TTGGACCTAACGGTGAAGAGCATGAGTTTGAGGCCCAGGAAGACCAGTAC
ATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCG
CGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTG
ACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTAT
CTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGTGATTCAGTCTCA
CAAGGAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCA
AGTATGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGG
ACCTACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGAATCT
TTAAATTTTCATTTGGTTATACTATTACTGGCATTTTGGGAAAAAAAAAA
AAAAA
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