CX298273

Overview
NameCX298273
Unique NameCX298273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298273 vs. ExPASy Swiss-Prot
Match: Y019_PROM5 (UPF0133 protein P9515_00191 OS=Prochlorococcus marinus (strain MIT 9515) GN=P9515_00191 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   33 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 338
            L N   L E  KKA+ + Q  A ++Q EL + E +G  + E+IKV +SGNQ P+R E+ +   E   E++   + EA K AH+ S   MKERM+DL   L +
Sbjct:    6 LPNFGQLTEAFKKAKEIQQ-NAQKLQDELESMEIEGKSDDEMIKVWISGNQLPLRVEVKDTIAESNKEEIEKNILEAIKKAHETSTTTMKERMNDLTGGLNL 106          
BLAST of CX298273 vs. ExPASy Swiss-Prot
Match: Y020_PROMP (UPF0133 protein PMM0020 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM0020 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.913e-13
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 3
Query:   33 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 338
            L N   L E  KKA+ + Q  A ++Q EL + E +G  + E+IKV +SGNQ P+R E+ E       E++   + EA K AH+ S   MKERM+DL   L +
Sbjct:    6 LPNFGQLTEAFKKAKEIQQ-NAQKLQDELESMEIEGKSDDEMIKVWISGNQLPLRVEVNENISTANKEEIEKNILEAIKKAHESSTTTMKERMNDLTGGLNL 106          
BLAST of CX298273 vs. ExPASy Swiss-Prot
Match: Y1847_SYNY3 (UPF0133 protein slr1847 OS=Synechocystis sp. (strain PCC 6803) GN=slr1847 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   33 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMP 341
            LG ++ L E  +KAQ V Q  A  +Q+EL   E  G     L+ V +SGNQ+P+  EI  +A+E GAE LS  VTEA K A+ +S   M+ +M +L   L +P
Sbjct:   11 LGKIKELQEAFQKAQQV-QEGAKVLQEELERMEIPGKSADGLVTVLMSGNQEPLSIEIDPSALEKGAEGLSASVTEAMKAAYAESTETMRSKMEELTSGLNLP 112          
BLAST of CX298273 vs. ExPASy Swiss-Prot
Match: Y019_PROM0 (UPF0133 protein P9301_00191 OS=Prochlorococcus marinus (strain MIT 9301) GN=P9301_00191 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   33 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 338
            L N   L E  KKA+ + Q +A ++Q EL   E +G  + E+IKV +SGNQ P++ E+ E  +    EK+   + +A K AH+ S   MKERM+DL   L +
Sbjct:    6 LPNFGQLTEAFKKAKQIQQ-DAQKLQDELENMEIEGKSDDEMIKVWISGNQLPLKVEVQENFLNADKEKIEQNILQAIKKAHELSTTTMKERMNDLTGGLNL 106          
BLAST of CX298273 vs. ExPASy Swiss-Prot
Match: Y019_PROM2 (UPF0133 protein P9215_00191 OS=Prochlorococcus marinus (strain MIT 9215) GN=P9215_00191 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   33 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 338
            L N   L E  KKA+ + Q +A ++Q EL   E +G  + E+IKV +SGNQ P++ E+ E  +    EK+   + +A + AH+ S   MKERM+DL   L +
Sbjct:    6 LPNFGQLTEAFKKAKQIQQ-DAQKLQDELENMEIEGKSDDEMIKVWISGNQLPLKVEVQENILNADKEKIEKNILQAIQKAHESSTTTMKERMNDLTGGLNL 106          
BLAST of CX298273 vs. ExPASy Swiss-Prot
Match: Y020_PROM9 (UPF0133 protein PMT9312_0020 OS=Prochlorococcus marinus (strain MIT 9312) GN=PMT9312_0020 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.593e-12
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   33 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 338
            L N   L E  KKA+ + Q +A ++Q EL   E +G  + E++KV +SGNQ P+R E+ E  +    EK+   + +A + AH+ S   MKERM+DL   L +
Sbjct:    6 LPNFGQLTEAFKKAKQIQQ-DAQKLQDELENMEIEGESDDEMVKVWISGNQLPLRVEVQENILNSDKEKIEQNILQAIQKAHELSTTTMKERMNDLTGGLNL 106          
BLAST of CX298273 vs. ExPASy Swiss-Prot
Match: Y019_PROMS (UPF0133 protein A9601_00191 OS=Prochlorococcus marinus (strain AS9601) GN=A9601_00191 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 3
Query:   33 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGM 338
            L N   L E  KKA+ + Q +A ++Q EL   E +G  + E+IKV +SGNQ P++ E+ E       E++   + +A K AH+ S   MKERM+DL   L +
Sbjct:    6 LPNFGQLTEAFKKAKQIQQ-DAQKLQDELENMEIEGKSDDEMIKVWISGNQLPLKVEVQENIFNSNKEQIEKNILQAIKKAHELSTTTMKERMNDLTGGLNL 106          
BLAST of CX298273 vs. ExPASy Swiss-Prot
Match: Y3498_GLOVI (UPF0133 protein glr3498 OS=Gloeobacter violaceus GN=glr3498 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3
Query:   27 GILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQSLGMPQGL 350
            G +G  Q   + VK+    +Q  + ++Q ELAA   +G   G L+KVTLSGNQ+P    I    +    E +  L+  AYKDA+ KS   MK +M +L   + +P GL
Sbjct:    6 GPMGQFQEALKRVKQ----IQEGSAKLQDELAALSIEGVAGGGLVKVTLSGNQEPTGVTIDPQLLSESKEVVEDLLLTAYKDAYTKSAETMKAKMQELTGGMELPPGL 109          
The following BLAST results are available for this feature:
BLAST of CX298273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
Y019_PROM55.226e-1340.20UPF0133 protein P9515_00191 OS=Prochlorococcus mar... [more]
Y020_PROMP8.913e-1340.20UPF0133 protein PMM0020 OS=Prochlorococcus marinus... [more]
Y1847_SYNY31.520e-1241.75UPF0133 protein slr1847 OS=Synechocystis sp. (stra... [more]
Y019_PROM01.520e-1239.22UPF0133 protein P9301_00191 OS=Prochlorococcus mar... [more]
Y019_PROM21.986e-1238.24UPF0133 protein P9215_00191 OS=Prochlorococcus mar... [more]
Y020_PROM92.593e-1238.24UPF0133 protein PMT9312_0020 OS=Prochlorococcus ma... [more]
Y019_PROMS5.778e-1238.24UPF0133 protein A9601_00191 OS=Prochlorococcus mar... [more]
Y3498_GLOVI9.855e-1237.04UPF0133 protein glr3498 OS=Gloeobacter violaceus G... [more]

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Properties
Property NameValue
Genbank descriptionC06010D11SK RindPdig24 Citrus clementina cDNA clone C06010D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298273 ID=CX298273; Name=CX298273; organism=Citrus clementina; type=EST; length=605bp
AAGGTGATGATGCTCCTTCAAAGGCAGGAATTCTTGGAAATATGCAGAAT
CTATATGAGACTGTGAAAAAGGCACAAATGGTGGTTCAAGTTGAGGCAGT
GCGGGTGCAAAAAGAACTGGCTGCAGCTGAGTTTGATGGTTATTGTGAGG
GTGAGCTGATTAAGGTAACATTATCTGGAAACCAGCAACCAGTACGCACT
GAGATCACAGAGGCGGCAATGGAATTAGGTGCAGAAAAACTTTCACTCTT
AGTTACTGAGGCATACAAGGATGCACACCAGAAGAGTGTACTGGCCATGA
AGGAGAGAATGAGTGATCTTGCTCAGAGCTTAGGAATGCCTCAAGGTCTA
AGTGAGGGATTAAAGTAAGAACGTCCACTCACCAGTATCTAAGATAGAGC
TTCAATTTTGTCTACAGACCAGGCTGAATGGCAATCCATATTGTGATCTT
AAGATTTACTCAGCTGTTCAATATCATTCTGGCTTAAATTGAGTAGAGTA
ACTCTAGTTGGAACTTGTGATCTTTGTTCACCTCCCCCATTGTAACAATT
ACAGGAAATTTGACCTTTTTTTGTTGATGCATTTATAATTATAGTTTTTT
TTTTT
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