CX298308

Overview
NameCX298308
Unique NameCX298308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length455
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: CP11A_HORSE (Cholesterol side-chain cleavage enzyme, mitochondrial OS=Equus caballus GN=CYP11A1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   58 ITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDMEEKFG 453
            +  +P L+A +KETLRLHP + + L R    D+ I  +++P    V V+ + +G+D   + NP  F P R+L  N D    +F  + FG G R C G  +A   + L L  ++ +F  +++  N D++  FG
Sbjct:  370 VQMVPLLKASIKETLRLHP-IAVTLQRYPQNDLVIRDYMIPAKTLVQVSIYTMGQDPTFFSNPRRFDPTRWLDKNKDL--THFRNLGFGWGVRQCLGRRIAELEMTLFLIHILENFRVEIQHLN-DVDSTFG 497          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C6A21_DROME (Probable cytochrome P450 6a21 OS=Drosophila melanogaster GN=Cyp6a21 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 1
Query:    4 RLELEQTIGK--GKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAG---FIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 417
            R E ++ I K  G+   ES +  L YL  VV ETLRL+  +P+L  R+ L D E+ G   +++ KG  V +   A+ RDE  + NP +F P+ F    +  +  + E +PFG G R C G+        + L  LI  F + +
Sbjct:  335 RKECQEVIEKCNGELNYES-MKDLVYLDQVVSETLRLYTVLPVL-NRECLEDYEVPGHPKYVIKKGMPVLIPCGAMHRDEKLYANPNTFNPDNFSPERVKERD-SVEWLPFGDGPRNCIGMRFGQMQARIGLALLIKDFKFSV 474          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C16B2_PICSI (Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 41/138 (29.71%), Postives = 68/138 (49.28%), Query Frame = 1
Query:    4 RLELEQTIGKGKTIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 417
            +L++  +   G+ +E  D+ R+ Y   V +E LRL PA      RKA+ +    GF +PKG +++    +  R    + NP +F P RF G         +  +PFG G R+CPG   A   + + L +++ +  W L
Sbjct:  334 QLDIAGSKEAGQLLEWEDLQRMKYSWRVAQEALRLFPAAQGSF-RKAIKEFIYDGFTIPKGWKMYWTVNSTHRKSEYFSNPETFDPSRFEGEG----PPPYTFVPFGGGPRMCPGNEFARLEILVFLHNIVKNCKWNL 466          
BLAST of CX298308 vs. ExPASy Swiss-Prot
Match: C11B1_SHEEP (Cytochrome P450 11B1, mitochondrial OS=Ovis aries GN=CYP11B1 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 49/156 (31.41%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   10 ELEQTIGKGKTIEESDI--------TRLPYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLA-IRMLHLMLGSLINSFDWKLEDENMDMEEKF 450
            E++Q + +   + E+ I        T LP L+A +KETLRL+P V + L R+  +D+ +  + +P G  V V  +++GR+   +  P S+ P+R+L  +    G  F  + FG G R C G  +A + ML L+   L N     L  E++ M  +F
Sbjct:  335 EVQQALRQESLVAEARISENPQRATTELPLLRAALKETLRLYP-VGITLERQVSSDLVLQNYHIPAGTLVKVLLYSLGRNPAVFARPESYHPQRWL--DRQGSGSRFPHLAFGFGMRQCLGRRVAEVEMLLLLHHVLKNFLVETLAQEDIKMVYRF 487          
The following BLAST results are available for this feature:
BLAST of CX298308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 494
Match NameE-valueIdentityDescription
CP11A_HORSE9.486e-1132.58Cholesterol side-chain cleavage enzyme, mitochondr... [more]
C6A21_DROME9.486e-1133.57Probable cytochrome P450 6a21 OS=Drosophila melano... [more]
C16B2_PICSI9.486e-1129.71Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP71... [more]
C11B1_SHEEP9.486e-1131.41Cytochrome P450 11B1, mitochondrial OS=Ovis aries ... [more]

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Properties
Property NameValue
Genbank descriptionC06010G10SK RindPdig24 Citrus clementina cDNA clone C06010G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298308 ID=CX298308; Name=CX298308; organism=Citrus clementina; type=EST; length=455bp
GCAAGATTAGAGTTAGAACAAACGATTGGTAAAGGCAAAACAATTGAGGA
ATCAGACATCACTCGGTTACCTTATCTACAAGCAGTAGTCAAAGAAACCT
TGAGGCTGCACCCAGCAGTTCCCTTGTTACTTCCTCGTAAAGCTTTAGCC
GACGTAGAAATTGCGGGCTTCATAGTTCCAAAAGGAGCACAGGTTTTTGT
TAATGCGTGGGCAATTGGCAGAGATGAACTCACATGGGAGAACCCTCTTT
CTTTTATGCCTGAGAGATTCTTGGGGTCAAATCTCGATTTCAAAGGCAGA
AACTTTGAGCTGATCCCCTTTGGATCTGGCCGGCGAATATGTCCTGGTTT
GCCGTTGGCAATTAGAATGTTACATCTAATGTTGGGTTCACTCATTAACT
CCTTTGATTGGAAGCTGGAAGATGAGAACATGGATATGGAAGAAAAATTT
GGCAT
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