CX298315

Overview
NameCX298315
Unique NameCX298315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.436e-39
Identity = 77/130 (59.23%), Postives = 97/130 (74.62%), Query Frame = 2
Query:    5 AEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSR-ADCSTSPRSILKCCW 391
            + ICDFEFDPCGYSMN++EG AVSTIH+TPEDGFSY+SFEAVGYD + V L+ L+ RVL CF+P EFS+AL +DI  +    T  + +KGY   EK  EELG +GS++Y  F +  +   SPRS+LKCCW
Sbjct:  221 SRICDFEFDPCGYSMNAVEGPAVSTIHITPEDGFSYSSFEAVGYDPKSVNLSDLVARVLNCFQPGEFSIALQADIASELLEKTSSVHVKGYRVEEKTCEELGMDGSIVYQKFVKTTERCESPRSVLKCCW 350          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.155e-39
Identity = 74/127 (58.27%), Postives = 93/127 (73.23%), Query Frame = 2
Query:    5 AEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKC 385
            +EICDF+F+PCGYSMNS+EG AVSTIH+TPEDGFSYASFE  GYD + + L  ++ RVLACF+P EFSVA+H D          +LD+KGY C EK ++ LG +GS++Y  F +A    SPRS LKC
Sbjct:  219 SEICDFDFEPCGYSMNSVEGPAVSTIHITPEDGFSYASFETAGYDLKAMNLNEMVMRVLACFQPTEFSVAVHVDNASKSFEQGCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVKASDCGSPRSTLKC 345          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.426e-39
Identity = 73/127 (57.48%), Postives = 92/127 (72.44%), Query Frame = 2
Query:    5 AEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKC 385
            +EICDF+F+PCGYSMNS+EG AVSTIH+TPEDGFSYASFE  GYD + + L  ++ RVLACF+P EFSVA+H D          +LD+KGY C EK ++ LG +GS++Y  F +     SPRS LKC
Sbjct:  219 SEICDFDFEPCGYSMNSVEGSAVSTIHITPEDGFSYASFETAGYDLKAINLNEMVMRVLACFQPTEFSVAVHVDNASKSFEQGCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTSYCGSPRSTLKC 345          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM3_BRAJU (S-adenosylmethionine decarboxylase proenzyme 3 OS=Brassica juncea GN=SAMDC3 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.426e-39
Identity = 75/133 (56.39%), Postives = 101/133 (75.94%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSR-ADCSTSPRSILKCCWS 394
            +++ICDFEF+PCGYSMNS+EGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ RVL+CF+P +FSVA+HS +  + +     +DL+ Y C E+ +E LG  +G+++Y +F +      SPRS LKC WS
Sbjct:  220 KSQICDFEFEPCGYSMNSVEGDAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGSNAYKPEISVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTLKCEWS 352          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.835e-38
Identity = 77/134 (57.46%), Postives = 95/134 (70.90%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSRAD--CSTSPRSILKCCWS 394
            +++ICDFEF+PCGYSMNSIEGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ +VL CFKP +FSVA+HS +    +     +DL  Y C E   E LG   G+++Y  F +    C  SPRS LKC WS
Sbjct:  218 QSQICDFEFEPCGYSMNSIEGDAISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVSKVLTCFKPKQFSVAVHSTVAQKSYDSGLSVDLDDYGCKESTMESLGEERGTVMYQRFEKLGRYCG-SPRSTLKCEWS 350          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 76/134 (56.72%), Postives = 97/134 (72.39%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSRAD--CSTSPRSILKCCWS 394
            +++ICDFEF+PCGYSMNS+EGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ +VL CF+P +FSVA+HS +    +     +DL+ Y C E   E LG   G+++Y SF +    C  SPRS LKC WS
Sbjct:  222 QSQICDFEFEPCGYSMNSVEGDAISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVSKVLTCFEPKQFSVAVHSSVAQKSYDSGLSVDLEDYGCRETTIELLGEERGTVMYQSFEKLGRYCG-SPRSTLKCEWS 354          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.299e-36
Identity = 75/135 (55.56%), Postives = 95/135 (70.37%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEH--GDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRAD---CSTSPRSILKCCW 391
            ++ ICDF+F+PCGYSMN+IEG AVSTIH+TPEDGFSYASFEAVGYD +VV L  L+ERVLACF+P EFS+A+H+D    +        +++ GYS  E   EELG  GS+ Y  F +     C  +P+  LKCCW
Sbjct:  232 DSVICDFDFEPCGYSMNAIEGPAVSTIHITPEDGFSYASFEAVGYDLQVVDLNLLVERVLACFEPKEFSIAVHADTDTADKVLARNCSVNVIGYSREEGGIEELGLGGSVFYQKFCKGTAPVCPPAPKKTLKCCW 366          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM_SPIOL (S-adenosylmethionine decarboxylase proenzyme OS=Spinacia oleracea GN=SAMDC PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.251e-35
Identity = 71/135 (52.59%), Postives = 95/135 (70.37%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSRAD----CSTSPRSILKCCW 391
            +++ICDF+F+PCGYSMN+IEG A+STIH+TPEDGFSYASFEAVGYD +   L  L+ERVLACF+P+EFS+A+H++I  +       +++ GYS  E   EELG    S+ Y  F +A      +  P+  LKCCW
Sbjct:  218 DSKICDFDFEPCGYSMNAIEGPAISTIHITPEDGFSYASFEAVGYDLKKTDLNQLVERVLACFEPSEFSIAIHAEIAANSMEHNCYVNVNGYSREEGGIEELGFGAASVFYQKFCKASTGFGATNKPKPALKCCW 352          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 65/129 (50.39%), Postives = 85/129 (65.89%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRADCSTSPRSILKCC 388
            ++ ICDF+F+PCGYSMN+IEG AVSTIH+TPEDGFSYASFEAVGYD ++V +  L+ERVL CF+P EFS+A+  D           +++ GY   E   E LG  GS++Y  F +    +      KCC
Sbjct:  241 DSAICDFDFEPCGYSMNAIEGPAVSTIHITPEDGFSYASFEAVGYDLKIVDVNQLVERVLNCFQPREFSIAVSVDTADKVLEQYCAVNVAGYCREEGGVEGLGVGGSVLYQKFGKVATVSGLNKSPKCC 369          
BLAST of CX298315 vs. ExPASy Swiss-Prot
Match: DCAM1_BRAJU (S-adenosylmethionine decarboxylase proenzyme 1 OS=Brassica juncea GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.525e-30
Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = 2
Query:    2 EAEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDT-FMLDLKGYSCGE 289
            +++ICDFEF+PCGYSMNS+EGDA STIHVTPEDGFSYASFEAVGYDF  + L+ L+ RVL CF+P +FSVA+HS +    +  +   +DL+ Y C E
Sbjct:  220 QSQICDFEFEPCGYSMNSVEGDASSTIHVTPEDGFSYASFEAVGYDFTTMDLSQLVSRVLTCFEPKQFSVAVHSSVAQKSYDHSGLSVDLEDYGCRE 316          
The following BLAST results are available for this feature:
BLAST of CX298315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DCAM_DAUCA2.436e-3959.23S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_VICFA4.155e-3958.27S-adenosylmethionine decarboxylase proenzyme OS=Vi... [more]
DCAM_PEA5.426e-3957.48S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM3_BRAJU5.426e-3956.39S-adenosylmethionine decarboxylase proenzyme 3 OS=... [more]
DCAM2_ARATH7.835e-3857.46S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_BRAJU1.023e-3756.72S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_DIACA4.299e-3655.56S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_SPIOL1.251e-3552.59S-adenosylmethionine decarboxylase proenzyme OS=Sp... [more]
DCAM1_DIACA7.103e-3150.39S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM1_BRAJU3.525e-3061.86S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06010H05SK RindPdig24 Citrus clementina cDNA clone C06010H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298315 ID=CX298315; Name=CX298315; organism=Citrus clementina; type=EST; length=690bp
CGAGGCTGAGATTTGTGATTTTGAGTTTGACCCTTGTGGTTACTCCATGA
ATAGTATTGAAGGGGATGCAGTATCTACTATCCACGTCACACCTGAAGAT
GGTTTCAGTTATGCAAGTTTTGAGGCTGTGGGTTATGATTTTGAGGTTGT
GAAGTTGACTCCCTTGCTTGAGAGGGTGCTTGCTTGCTTCAAACCCGCTG
AGTTTTCTGTTGCTCTGCATTCTGACATTGTTGGCGATGAACATGGAGAC
ACCTTCATGCTGGACTTGAAGGGATATTCCTGTGGAGAAAAGATATATGA
AGAGCTCGGTAATAATGGTTCGCTGATCTACTACAGCTTTTCGAGGGCTG
ATTGCTCCACATCTCCTAGGTCAATCTTGAAATGCTGTTGGAGCGAGGAC
GAGAAGGACGAGGAAGTTGAAGGGAAATAGTGTCCCGGATATAATATCGT
GTTTGTTTTTTTCATTTTAATCCTTCGCTTATATAATAAAATGTGGTGGG
GTTATGTAATGGTAGGGCTTGAGCAGCCTTTACCTTTCCGTTTTGCTGCA
TTTTTCCTGTTATTGTGAACAAGGTCTTATGTTTTTGGATTTCTGTTATG
TTGGATTTCCGGAGATGTAGATGTTAAACCAGTATCTTCTTTTATAATAA
GAGTCATATTATTATATCATAAAAAAAAAAAAAAAAAAAA
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