CX298417

Overview
NameCX298417
Unique NameCX298417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_VITVI (ATP-dependent Clp protease proteolytic subunit OS=Vitis vinifera GN=clpP PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.516e-41
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ VES+ISNQLIG+M+YLSIE+E KDLY FINSPGGWV+PGIAIYDTMQFV P+V TIC+GLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVESEISNQLIGLMIYLSIEDENKDLYFFINSPGGWVLPGIAIYDTMQFVPPEVHTICLGLAASMGSFILVGGTITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_CHLSC (ATP-dependent Clp protease proteolytic subunit OS=Chloranthus spicatus GN=clpP PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.516e-41
Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 3
Query:  195 INRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            +NRL+RERLLFLGQ V+S+ISNQL+G+MVYLSIE++T+DLYLFINSPGGWVIPG+ IYDTMQFV PDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   23 VNRLHRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGLTIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 120          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_AMBTC (ATP-dependent Clp protease proteolytic subunit OS=Amborella trichopoda GN=clpP PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.592e-41
Identity = 80/99 (80.81%), Postives = 90/99 (90.91%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRL+RERLLFLGQ VE +ISNQ++G+MVYLSIE++T+DLYLFINSPGGWVIPGIAIYD MQFV PDV TICMGLAASMGSF+LA G  TKRLAFPHA
Sbjct:   23 IYNRLHRERLLFLGQEVEGEISNQIVGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDAMQFVPPDVHTICMGLAASMGSFVLAGGEITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_SOLTU (ATP-dependent Clp protease proteolytic subunit OS=Solanum tuberosum GN=clpP PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 77/97 (79.38%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ + +D+SNQLIG+M+YLS+E+E K+LYLF+NSPGGWVIPGIAIYDTMQFVRPD+ TIC+GLAASMGSF+LA G  TKR+AFPHA
Sbjct:   25 NRLYRERLLFLGQGISTDLSNQLIGLMMYLSMEDENKELYLFVNSPGGWVIPGIAIYDTMQFVRPDIHTICIGLAASMGSFILAGGQLTKRIAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_SOLLC (ATP-dependent Clp protease proteolytic subunit OS=Solanum lycopersicum GN=clpP PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 77/99 (77.78%), Postives = 91/99 (91.92%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERLLFLGQ + +++SNQLIG+M+YLS+E+E KDLYLF+NSPGGWVIPGIAIYDTMQFVRPD+ TIC+GLAASMGSF+LA G  TKR+AFPHA
Sbjct:   23 IYNRLYRERLLFLGQGIGTELSNQLIGLMLYLSMEDENKDLYLFVNSPGGWVIPGIAIYDTMQFVRPDIHTICLGLAASMGSFILAGGQLTKRIAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_SOLBU (ATP-dependent Clp protease proteolytic subunit OS=Solanum bulbocastanum GN=clpP PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 77/97 (79.38%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ + +D+SNQLIG+M+YLS+E+E K+LYLF+NSPGGWVIPGIAIYDTMQFVRPD+ TIC+GLAASMGSF+LA G  TKR+AFPHA
Sbjct:   25 NRLYRERLLFLGQGISTDLSNQLIGLMMYLSMEDENKELYLFVNSPGGWVIPGIAIYDTMQFVRPDIHTICIGLAASMGSFILAGGQLTKRIAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_AETGR (ATP-dependent Clp protease proteolytic subunit OS=Aethionema grandiflora GN=clpP PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.023e-40
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERL FLGQ V++DISNQLI +M+YLSIE +TKDLYLFINSPGGWVI G+AIYDTMQFVRPDVQTICMGLAAS+ SF+L  GA TKR+AFPHA
Sbjct:   23 IYNRLYRERLFFLGQEVDTDISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_AETCO (ATP-dependent Clp protease proteolytic subunit OS=Aethionema cordifolium GN=clpP PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.023e-40
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERL FLGQ V++DISNQLI +M+YLSIE +TKDLYLFINSPGGWVI G+AIYDTMQFVRPDVQTICMGLAAS+ SF+L  GA TKR+AFPHA
Sbjct:   23 IYNRLYRERLFFLGQEVDTDISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_DIOEL (ATP-dependent Clp protease proteolytic subunit OS=Dioscorea elephantipes GN=clpP PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.745e-40
Identity = 78/98 (79.59%), Postives = 89/98 (90.82%), Query Frame = 3
Query:  195 INRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            +NRL+RERLLFLGQ V++++SNQL+G+MVYLSIE+ TKDLYLFINSPGGWVIPG+AIYDTMQFV PDV TICMGLAASMGS +L  G  TKRLAFPHA
Sbjct:   23 VNRLHRERLLFLGQEVDNEVSNQLVGLMVYLSIEDATKDLYLFINSPGGWVIPGMAIYDTMQFVSPDVHTICMGLAASMGSLILVGGEITKRLAFPHA 120          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_RANMC (ATP-dependent Clp protease proteolytic subunit OS=Ranunculus macranthus GN=clpP PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.279e-40
Identity = 78/98 (79.59%), Postives = 90/98 (91.84%), Query Frame = 3
Query:  195 INRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + RL+RERLLFLGQ V+S+ISNQLIG+MVYLS+E+ET+DL+LFINSPGGWV+PG+AIYDTMQFV PDV TICMGLAASMGSFLL  G  TKR+AFPHA
Sbjct:   23 VYRLHRERLLFLGQGVDSEISNQLIGLMVYLSLEDETRDLFLFINSPGGWVVPGVAIYDTMQFVPPDVHTICMGLAASMGSFLLVGGEITKRIAFPHA 120          
The following BLAST results are available for this feature:
BLAST of CX298417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_VITVI3.516e-4182.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLSC3.516e-4180.61ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AMBTC4.592e-4180.81ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SOLTU5.997e-4179.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SOLLC5.997e-4177.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SOLBU5.997e-4179.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AETGR1.023e-4079.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AETCO1.023e-4079.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DIOEL1.745e-4079.59ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RANMC2.279e-4079.59ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06012A03SK RindPdig24 Citrus clementina cDNA clone C06012A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298417 ID=CX298417; Name=CX298417; organism=Citrus clementina; type=EST; length=703bp
GAATATTATAGGTCTAGGAAACCGGCTAAACTCAGCGTTCTTGAAAACCG
GAAGAAAAGCCCCTCGATAGAAGCGAGGAAAAAAGAAAGGAAAGGGGCTA
GGAGCTACACATTGATTCGTTTTTCGCAAGTTTTGTTGAACCGTATGCAT
CAAAAGATGCCTGTACGGCTCCGAAGGGATACTGTTTTATCCTAATCAAC
CGACTTTATCGAGAAAGATTACTTTTTTTAGGTCAAATGGTTGAGAGCGA
TATCTCGAATCAACTTATTGGTATTATGGTATATCTCAGTATAGAGAACG
AGACCAAGGATTTGTATTTATTTATTAACTCTCCTGGCGGATGGGTAATA
CCCGGGATAGCAATTTATGATACTATGCAATTTGTGCGACCCGATGTACA
GACAATATGCATGGGATTGGCCGCCTCCATGGGGTCTTTTCTCCTGGCCG
CCGGAGCAAGTACCAAACGTCTAGCATTCCCTCACGCTTGGCGCCAATGA
GTTTTTTATTTGAGAGAAAAAAGAAGACTATGCCTTCGCCATATGAATTC
TTAATATTAAGTAATAATAGCATGGCACTTCGAATTCGATATGAAAATTG
TTAGTGTTTTTTTTTTTTCAAAATATTTGATTATGTATCGAAGCAGTAGT
ATGAGATAAAGAAGGGGTATTCCGAGTTTATCTTACCTATCGGAGGCCTA
TTG
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