CX298417

Overview
NameCX298417
Unique NameCX298417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_OLIPU (ATP-dependent Clp protease proteolytic subunit OS=Olimarabidopsis pumila GN=clpP PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.976e-40
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERL FLGQ V+++ISNQLI +M+YLSIE +TKDLYLFINSPGGWVI G+AIYDTMQFVRPDVQTICMGLAAS+ SF+L  GA TKR+AFPHA
Sbjct:   23 IYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_DRANE (ATP-dependent Clp protease proteolytic subunit OS=Draba nemorosa GN=clpP PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.976e-40
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERL FLGQ V+++ISNQLI +M+YLSIE +TKDLYLFINSPGGWVI G+AIYDTMQFVRPDVQTICMGLAAS+ SF+L  GA TKR+AFPHA
Sbjct:   23 IYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_CRUWA (ATP-dependent Clp protease proteolytic subunit OS=Crucihimalaya wallichii GN=clpP PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.976e-40
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERL FLGQ V+++ISNQLI +M+YLSIE +TKDLYLFINSPGGWVI G+AIYDTMQFVRPDVQTICMGLAAS+ SF+L  GA TKR+AFPHA
Sbjct:   23 IYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_BARVE (ATP-dependent Clp protease proteolytic subunit OS=Barbarea verna GN=clpP PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.976e-40
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERL FLGQ V+++ISNQLI +M+YLSIE +TKDLYLFINSPGGWVI G+AIYDTMQFVRPDVQTICMGLAAS+ SF+L  GA TKR+AFPHA
Sbjct:   23 IYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP1_ARATH (ATP-dependent Clp protease proteolytic subunit 1 OS=Arabidopsis thaliana GN=clpP1 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.976e-40
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERL FLGQ V+++ISNQLI +M+YLSIE +TKDLYLFINSPGGWVI G+AIYDTMQFVRPDVQTICMGLAAS+ SF+L  GA TKR+AFPHA
Sbjct:   23 IYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_NASOF (ATP-dependent Clp protease proteolytic subunit OS=Nasturtium officinale GN=clpP PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.887e-40
Identity = 77/99 (77.78%), Postives = 89/99 (89.90%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERL FLGQ V+++ISNQLI +M+YLSIE +TKDLYLFINSPGGWVI G+A+YDTMQFVRPDVQTICMGLAAS+ SF+L  GA TKR+AFPHA
Sbjct:   23 IYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAVYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_LEPVR (ATP-dependent Clp protease proteolytic subunit OS=Lepidium virginicum GN=clpP PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.887e-40
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERL FLGQ V+++ISNQLI +M+YLSIE +TKDLYLFINSPGGWVI G+AIYDTMQFVRPDVQTICMGLAAS+ SF+L  GA TKR+AFPHA
Sbjct:   23 IYNRLYRERLFFLGQDVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGAITKRIAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_NYMAL (ATP-dependent Clp protease proteolytic subunit OS=Nymphaea alba GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.131e-39
Identity = 78/99 (78.79%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRL+RERLLFLGQ V+S+ISNQL+G+MVYLS+E+ T+DLYLFINSPGGWVIPGIAIYD MQ V PDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   23 IYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSMEDNTRDLYLFINSPGGWVIPGIAIYDAMQIVPPDVHTICMGLAASMGSFILVGGEFTKRLAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_NUPAD (ATP-dependent Clp protease proteolytic subunit OS=Nuphar advena GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.131e-39
Identity = 78/99 (78.79%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRL+RERLLFLGQ V+S+ISNQL+G+MVYLS+E+ T+DLYLFINSPGGWVIPGIAIYD MQ V PDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   23 IYNRLHRERLLFLGQGVDSEISNQLVGLMVYLSMEDNTRDLYLFINSPGGWVIPGIAIYDAMQIVPPDVHTICMGLAASMGSFILVGGEFTKRLAFPHA 121
[Close]
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_LOBMA (ATP-dependent Clp protease proteolytic subunit OS=Lobularia maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.131e-39
Identity = 77/99 (77.78%), Postives = 88/99 (88.89%), Query Frame = 3 
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERL FLGQ V+++ISNQLI +M+YLSIE +TKDLYLFINSPGGWVI G+AIYDTMQFVRPDVQTICMGLAAS+ SF+L  G  TKR+AFPHA
Sbjct:   23 IYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASIASFILVGGEITKRIAFPHA 121
The following BLAST results are available for this feature:
BLAST of CX298417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_OLIPU2.976e-4078.79ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DRANE2.976e-4078.79ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CRUWA2.976e-4078.79ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BARVE2.976e-4078.79ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_ARATH2.976e-4078.79ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_NASOF3.887e-4077.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPVR3.887e-4078.79ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NYMAL1.131e-3978.79ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NUPAD1.131e-3978.79ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LOBMA1.131e-3977.78ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06012A03SK RindPdig24 Citrus clementina cDNA clone C06012A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298417 ID=CX298417; Name=CX298417; organism=Citrus clementina; type=EST; length=703bp
GAATATTATAGGTCTAGGAAACCGGCTAAACTCAGCGTTCTTGAAAACCG
GAAGAAAAGCCCCTCGATAGAAGCGAGGAAAAAAGAAAGGAAAGGGGCTA
GGAGCTACACATTGATTCGTTTTTCGCAAGTTTTGTTGAACCGTATGCAT
CAAAAGATGCCTGTACGGCTCCGAAGGGATACTGTTTTATCCTAATCAAC
CGACTTTATCGAGAAAGATTACTTTTTTTAGGTCAAATGGTTGAGAGCGA
TATCTCGAATCAACTTATTGGTATTATGGTATATCTCAGTATAGAGAACG
AGACCAAGGATTTGTATTTATTTATTAACTCTCCTGGCGGATGGGTAATA
CCCGGGATAGCAATTTATGATACTATGCAATTTGTGCGACCCGATGTACA
GACAATATGCATGGGATTGGCCGCCTCCATGGGGTCTTTTCTCCTGGCCG
CCGGAGCAAGTACCAAACGTCTAGCATTCCCTCACGCTTGGCGCCAATGA
GTTTTTTATTTGAGAGAAAAAAGAAGACTATGCCTTCGCCATATGAATTC
TTAATATTAAGTAATAATAGCATGGCACTTCGAATTCGATATGAAAATTG
TTAGTGTTTTTTTTTTTTCAAAATATTTGATTATGTATCGAAGCAGTAGT
ATGAGATAAAGAAGGGGTATTCCGAGTTTATCTTACCTATCGGAGGCCTA
TTG
back to top