CX298417

Overview
NameCX298417
Unique NameCX298417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_CHLVU (ATP-dependent Clp protease proteolytic subunit OS=Chlorella vulgaris GN=clpP PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 57/99 (57.58%), Postives = 77/99 (77.78%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            L NRLYRER+LFL Q ++ +++NQLIGIM+YL+ E + K LY++INSPGG V  GIA+YD M +++ +V TIC+G AASM SF+LA G   KR+A PH+
Sbjct:   23 LYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVYDAMNYIKSEVTTICVGTAASMASFILAGGDRGKRIALPHS 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_CHLAT (ATP-dependent Clp protease proteolytic subunit OS=Chlorokybus atmophyticus GN=clpP PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27
Identity = 55/97 (56.70%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRER+LFLG+ ++ +++NQLIG+MV+L+ E++TK ++ +INSPGG +  G+ +YD +Q +  DV TICMGLAASM SF+LA G   +RL FPHA
Sbjct:   25 NRLYRERILFLGEDLDDEVANQLIGVMVFLNSEDDTKGIFFYINSPGGSMNSGLGVYDMIQHINVDVTTICMGLAASMASFILAGGTPGQRLMFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMA (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 58/99 (58.59%), Postives = 75/99 (75.76%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            +  RL  ER+LFLGQ V   ++N L+  M+YL  E+ TK +YL+INSPGG V  G+AIYDTM++V+ DV TIC+GLAASMG+FLL+AG   KRLA PH+
Sbjct:   23 IYTRLGAERILFLGQEVTDGVANSLVAQMLYLDSEDSTKPIYLYINSPGGSVTAGLAIYDTMKYVKSDVVTICVGLAASMGAFLLSAGTKNKRLALPHS 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP1_ANASP (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 55/101 (54.46%), Postives = 80/101 (79.21%), Query Frame = 3
Query:  186 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            F + +RL RER++FLGQ V+S+++N ++  +++L  E+  KD+YL+INSPGG V  G+ I+DTM+ +RPDV TIC GLAASMG+FLL+AGA  KR++ PH+
Sbjct:   17 FDIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHS 117          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_PSEAK (ATP-dependent Clp protease proteolytic subunit OS=Pseudendoclonium akinetum GN=clpP PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 55/99 (55.56%), Postives = 78/99 (78.79%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            L NRLYRER+LFL Q ++ +++NQLIGIM+YL+ E+++K +Y++INSPGG V  G+ ++D M +++ DV TIC+G AASM SF+LA G   KRLA PH+
Sbjct:   23 LYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEDKSKGIYVYINSPGGSVTCGVGVFDAMNYIKSDVTTICVGTAASMASFVLAGGRKGKRLALPHS 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNJA (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 52/99 (52.53%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            L +RLY+ER+LF+G+ ++ +++N ++G+M+YL+ ++  KD+ ++INSPGG V  G+AIYDTM  V+PD+ T+C+G AASMG+FLLAAG   KR A PH+
Sbjct:   23 LDDRLYQERILFIGEPIDDNLANTIVGVMLYLNSQDPQKDIVMYINSPGGSVTAGMAIYDTMNHVKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHS 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMM (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 56/101 (55.45%), Postives = 78/101 (77.23%), Query Frame = 3
Query:  186 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            F + +RL RER++FLG+ V SD +N+++  M++L  E+  KD+YL+INSPGG V  G+ I+DTMQ V+PDVQT+C+GLAASMG+FLL AGA  KR +  H+
Sbjct:   16 FDIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHS 116          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNP6 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 54/101 (53.47%), Postives = 78/101 (77.23%), Query Frame = 3
Query:  186 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            F + +RL RER++FLG+ V SD++N+++  +++L  E+  KD+YL+INSPGG V  G+ I+DTM  +RPDV T+C+GLAASMG+FLLAAGA  KR +  H+
Sbjct:   16 FDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHS 116          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNE7 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 54/101 (53.47%), Postives = 78/101 (77.23%), Query Frame = 3
Query:  186 FILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            F + +RL RER++FLG+ V SD++N+++  +++L  E+  KD+YL+INSPGG V  G+ I+DTM  +RPDV T+C+GLAASMG+FLLAAGA  KR +  H+
Sbjct:   16 FDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHS 116          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNJB (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. GN=clpP1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 51/99 (51.52%), Postives = 78/99 (78.79%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            L +RLY+ER+LF+G+ ++  ++N ++G+M+YL+ ++  KD+ ++INSPGG V  G+AIYDTM  ++PD+ T+C+G AASMG+FLLAAG   KR A PH+
Sbjct:   23 LDDRLYQERILFIGEPIDDSLANTIVGVMLYLNSQDPQKDIVMYINSPGGSVTAGMAIYDTMNHIKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHS 121          
The following BLAST results are available for this feature:
BLAST of CX298417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CHLVU1.694e-2757.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLAT1.694e-2756.70ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMA4.929e-2758.59ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_ANASP4.929e-2754.46ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_PSEAK6.437e-2755.56ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_SYNJA6.437e-2752.53ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP3_PROMM8.407e-2755.45ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP1_SYNP68.407e-2753.47ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNE78.407e-2753.47ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNJB1.098e-2651.52ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionC06012A03SK RindPdig24 Citrus clementina cDNA clone C06012A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298417 ID=CX298417; Name=CX298417; organism=Citrus clementina; type=EST; length=703bp
GAATATTATAGGTCTAGGAAACCGGCTAAACTCAGCGTTCTTGAAAACCG
GAAGAAAAGCCCCTCGATAGAAGCGAGGAAAAAAGAAAGGAAAGGGGCTA
GGAGCTACACATTGATTCGTTTTTCGCAAGTTTTGTTGAACCGTATGCAT
CAAAAGATGCCTGTACGGCTCCGAAGGGATACTGTTTTATCCTAATCAAC
CGACTTTATCGAGAAAGATTACTTTTTTTAGGTCAAATGGTTGAGAGCGA
TATCTCGAATCAACTTATTGGTATTATGGTATATCTCAGTATAGAGAACG
AGACCAAGGATTTGTATTTATTTATTAACTCTCCTGGCGGATGGGTAATA
CCCGGGATAGCAATTTATGATACTATGCAATTTGTGCGACCCGATGTACA
GACAATATGCATGGGATTGGCCGCCTCCATGGGGTCTTTTCTCCTGGCCG
CCGGAGCAAGTACCAAACGTCTAGCATTCCCTCACGCTTGGCGCCAATGA
GTTTTTTATTTGAGAGAAAAAAGAAGACTATGCCTTCGCCATATGAATTC
TTAATATTAAGTAATAATAGCATGGCACTTCGAATTCGATATGAAAATTG
TTAGTGTTTTTTTTTTTTCAAAATATTTGATTATGTATCGAAGCAGTAGT
ATGAGATAAAGAAGGGGTATTCCGAGTTTATCTTACCTATCGGAGGCCTA
TTG
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