CX298422

Overview
NameCX298422
Unique NameCX298422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: KMCP1_RAT (Kidney mitochondrial carrier protein 1 OS=Rattus norvegicus GN=Slc25a30 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 39/130 (30.00%), Postives = 63/130 (48.46%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            G   LY G+   +L       I    Y+SL+      RP D T+++++ CG LSG+ SS    P D+++ RMQ + +         G++G F  I Q EG +GL++G+     +    VG+    Y+  K
Sbjct:   64 GLRALYSGIAPAMLRQASYGTIKIGTYQSLKRLAVE-RPEDETLLINVVCGILSGVISSAIANPTDVLKIRMQAQNS-----AVQGGMIGNFISIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVYDITK 187          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2536_DANRE (Solute carrier family 25 member 36-A OS=Danio rerio GN=slc25a36a PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 2
Query:   14 LYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            L++GLG  L+GV PS AI F+ Y + +    +    D T +  L+ G L+G  + TAT PI L++ R+QL+      R          R + QS+GL+G YRG+   Y  +   V I F+ YE++K  L
Sbjct:   80 LFRGLGPNLVGVAPSRAIYFAAYSTSKEKLNNVFDPDSTQVHMLSAG-LAGFTAITATNPIWLIKTRLQLDARNRGER--RMSAFECVRRVYQSDGLRGFYRGMSASYAGISETV-IHFVIYESIKRKL 204          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2533_MOUSE (Solute carrier family 25 member 33 OS=Mus musculus GN=Slc25a33 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 47/134 (35.07%), Postives = 71/134 (52.99%), Query Frame = 2
Query:   14 LYKGLGATLLGVGPSIAISFSVYESLRSFWQS-YRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSVP 412
            L++GLG  L+GV PS A+ F+ Y   +  +   + PN  TV + L+ GS +   ++T   PI +V+ RMQLE      +  N   L   R + Q+EG++G YRG+   Y  +   + I F  YE+LK  L   P
Sbjct:   90 LFRGLGPNLVGVAPSRAVYFACYSKAKEQFNGIFVPNSNTVHI-LSAGS-AAFVTNTLMNPIWMVKTRMQLERKVRGCKQMNT--LQCARRVYQTEGVRGFYRGLTASYAGISETI-ICFAIYESLKKCLKDAP 218          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: MCAT_ARATH (Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 44/143 (30.77%), Postives = 70/143 (48.95%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGA--------GGRARVYNNGLLGTFRYIIQSE-GLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLS 403
            G  GLYKG+GA L  V    A+ F+V   +    +S      T+      G+ +G A S    P +L++ R+Q +GA           A V   G +   R++++SE G +GL++G+ P + + VPG   +F  YE  K  L+
Sbjct:   61 GTKGLYKGMGAPLATVAAFNAVLFTVRGQMEGLLRSEAGVPLTISQQFVAGAGAGFAVSFLACPTELIKCRLQAQGALAGASTTSSVVAAVKYGGPMDVARHVLRSEGGARGLFKGLFPTFAREVPGNATMFAAYEAFKRFLA 203          
The following BLAST results are available for this feature:
BLAST of CX298422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
KMCP1_RAT5.095e-1130.00Kidney mitochondrial carrier protein 1 OS=Rattus n... [more]
S2536_DANRE6.655e-1135.66Solute carrier family 25 member 36-A OS=Danio reri... [more]
S2533_MOUSE6.655e-1135.07Solute carrier family 25 member 33 OS=Mus musculus... [more]
MCAT_ARATH6.655e-1130.77Mitochondrial carnitine/acylcarnitine carrier-like... [more]

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Properties
Property NameValue
Genbank descriptionC06012A08SK RindPdig24 Citrus clementina cDNA clone C06012A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298422 ID=CX298422; Name=CX298422; organism=Citrus clementina; type=EST; length=716bp
AGGATTTTTGGGCTTGTATAAAGGACTTGGAGCGACATTATTGGGTGTTG
GACCTAGTATAGCAATAAGTTTTTCTGTCTATGAGTCTCTCAGATCTTTT
TGGCAGTCTTACAGGCCCAATGATCCCACTGTCATGGTCAGCCTTGCATG
CGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACTTTTCCTATTGATC
TTGTGAGGAGAAGAATGCAGTTAGAAGGGGCCGGTGGTCGAGCTCGTGTC
TACAATAATGGGTTGTTAGGGACTTTTCGGTACATAATTCAGTCTGAAGG
TCTGCAGGGCTTGTATAGAGGCATTTTGCCAGAATATTACAAGGTGGTTC
CTGGTGTTGGCATTGTTTTCATGACTTACGAGACATTGAAGATGCTTTTA
TCAAGTGTTCCTACCAGTTTTTAGTTACTTATCGCCGGCATATGTTATGC
TATAACATGTCCATGAGTTCATAAATTATTAAACCCACTTTGACATGAAA
GAAAATTCTGTTAGTTTGGATATACTAGGCAGCTAGAACAAATGTCTGGC
ATTTGCTGAGAGTAACAATGGTGGTAAATTTTGTCGTTGCCACTATATGA
TTTCCCCTTTTTCCTTCATTTCGGTCGGATAATGTATAGGTGGTTAGAAC
TGCGAGAGTGATATCAGTGTATCCTGTTTCACTGATTCGAGTCTGACATT
TCAATGTGTAGCATCA
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