CX298422

Overview
NameCX298422
Unique NameCX298422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 49/146 (33.56%), Postives = 77/146 (52.74%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRP--------NDPTVM-----VSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLL--GTFRYIIQSEGL-QGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            GF G Y+GL  T+LG+ P   +SF  + +L+S   S+ P        ++P V+     V+L CG ++G  + T ++P D+ RRRMQL   G     +   L    T +Y+    G+ +GLYRG+   Y + +P   + F TYE +K
Sbjct:  184 GFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVAGAIAQTISYPFDVTRRRMQL---GTVLPEFEKCLTMRDTMKYVYGHHGIRKGLYRGLSLNYIRCIPSQAVAFTTYELMK 326          

HSP 2 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 48/140 (34.29%), Postives = 74/140 (52.86%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSE-GLQGLYRGILPEYYKVVPGVGIVFMTYETLKML-LSSVPT 415
            GFLGLYKG GA ++ + P  AI F  +E  ++   +       V   L  GS++G+ +   T+P+D+VR R+  +  G  +     G++  F+ I   E G  G YRG++P    + P  G+ F T+ TLK + LS  PT
Sbjct:   88 GFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHVH-RLMAGSMAGMTAVICTYPLDMVRVRLAFQVKGEHS---YTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPT 223          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC_BOVIN (Mitochondrial thiamine pyrophosphate carrier OS=Bos taurus GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTV---MVSLACGSLSGIASSTATFPIDLVRRRMQLEG------AGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE 382
            G L  YKGL  TL+ + P     FS+Y SL+  ++   P +        +L CGS +G+ S T T+P+DL ++R+Q+ G      + G+ R Y  GLL     +++ EG QG ++G+ P   K     G+VF  YE
Sbjct:  170 GPLVFYKGLNPTLIAIFPYAGFQFSIYSSLKRAYEWALPAEGKKNGNFKNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEQARASFGQVRSY-KGLLDCAGQVLREEGAQGCFKGLSPSLLKAALSTGLVFFWYE 304          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_CANGA (Mitochondrial thiamine pyrophosphate carrier 1 OS=Candida glabrata GN=TPC1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 47/143 (32.87%), Postives = 71/143 (49.65%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRP----NDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRAR--------VY----NNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE 382
            G +G + G G++++ +G + AI F VYES++ F +         DP  +++   G +SG  S  ATFP+D VRRR+Q+  +    R        +Y    N   LG    ++Q EG   LYRG+     K VP   I   +YE
Sbjct:  158 GLMGFFSGCGSSMINIGLNTAIMFGVYESIKIFTEERSKLSDRRDPFTLLNELAGPISGFTSKLATFPLDTVRRRIQIRNSPNEERHDREFTKDIYKSYKNRRFLGVGISMVQQEGPLSLYRGVTMSLIKSVPSTAISLWSYE 300          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2542_DANRE (Solute carrier family 25 member 42 OS=Danio rerio GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLR-SFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGL-QGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G   LY+G   T+LGV P   +SF  YE+L+ +  +      P     L  G+ +G+   +A++P+D+VRRRMQ  G  G      + +LGT R I+  EG+ +GLY+G+   + K    VGI FMT++  ++LL
Sbjct:  184 GLKTLYRGFTPTILGVVPYAGLSFFTYETLKKTHAEKTGRAHPFPYERLVFGACAGLIGQSASYPLDVVRRRMQTAGVTGHT---YSTVLGTMREIVAEEGIVRGLYKGLSMNWVKGPIAVGISFMTFDLTQILL 315          

HSP 2 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSF---WQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            GF  L++G  AT++ V P  AI F  +E  +     +  ++      +  L  GSL+G  ++  T+P+D+VR RM +        +Y+N ++  F  I + EGL+ LYRG  P    VVP  G+ F TYETLK
Sbjct:   87 GFFSLWRGNSATMVRVIPYAAIQFCAHEQYKGILGKYYGFQGKALPPVPRLLAGSLAGTTAAIITYPLDMVRARMAVTPK----EMYSN-IMDVFVRISREEGLKTLYRGFTPTILGVVPYAGLSFFTYETLK 214          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC_MOUSE (Mitochondrial thiamine pyrophosphate carrier OS=Mus musculus GN=Slc25a19 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 2
Query:   17 YKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTV---MVSLACGSLSGIASSTATFPIDLVRRRMQLEG------AGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE 382
            YKGL  T++ + P   + FS Y SL+  +    P D      + +L CG  SG+ S T T+P+DL+++R+Q+ G      A G+ R Y  GLL   + ++Q EG +G ++G+ P   K     G +F  YE
Sbjct:  175 YKGLTPTVIAIFPYAGLQFSCYRSLKRAYDWLIPPDGKQTGNLKNLLCGCGSGVISKTFTYPLDLIKKRLQVGGFEHARSAFGQVRSY-RGLLDLTQQVLQEEGTRGFFKGLSPSLMKAALSTGFMFFWYE 304          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC_HUMAN (Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 2
Query:   17 YKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTV---MVSLACGSLSGIASSTATFPIDLVRRRMQLEG------AGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE 382
            YKGL  TL+ + P   + FS Y SL+  ++   P +      + +L CGS +G+ S T T+P+DL ++R+Q+ G      A G+ R Y  GL+   + ++Q EG  G ++G+ P   K     G +F +YE
Sbjct:  175 YKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRY-KGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFSYE 304          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2541_HUMAN (Solute carrier family 25 member 41 OS=Homo sapiens GN=SLC25A41 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFW-QSYRP-NDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G   LY+G    +LG+ P      +VYE L+ FW +S R   DP+ +VSL+  +LS      A++P+ LVR RMQ +         N  + G  + I+  +G  GLYRG+ P   KV+P  GI ++ YE +K  L
Sbjct:  237 GTRALYRGYLPNMLGIIPYACTDLAVYEMLQCFWVKSGRDMGDPSGLVSLSSVTLSTTCGQMASYPLTLVRTRMQAQDT---VEGSNPTMRGVLQRILAQQGWLGLYRGMTPTLLKVLPAGGISYVVYEAMKKTL 368          

HSP 2 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 42/130 (32.31%), Postives = 64/130 (49.23%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            GF  L++G G  +L + P  AI FSV+E  ++++   +   P     L  GSL+   S T   P+++++ R+ L   G        GLL   R I+Q EG + LYRG LP    ++P        YE L+
Sbjct:  144 GFRSLWRGNGINVLKIAPEYAIKFSVFEQCKNYFCGIQ-GSPPFQERLLAGSLAVAISQTLINPMEVLKTRLTLRRTG-----QYKGLLDCARQILQREGTRALYRGYLPNMLGIIPYACTDLAVYEMLQ 267          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: YBT5_SCHPO (Uncharacterized mitochondrial carrier C12D12.05c OS=Schizosaccharomyces pombe GN=SPBC12D12.05c PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFW-------QSYRPND---PTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G  G Y+G+   +LG+ P  A     +E L+  W        +  P D   P  +V +A G+LSG   +T  FP++++R R+Q +G       Y+ G +  F    ++EG +GLY+G+ P   KV P V I ++ YE  K  L
Sbjct:  283 GIRGYYRGVLVGILGMFPYSATDLGTFEGLKRTWIGILASRDNVDPQDVKLPNGLV-MAFGALSGSTGATIVFPLNVIRTRLQTQGTSAHPATYD-GFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKKWL 423          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: UCP5_MOUSE (Brain mitochondrial carrier protein 1 OS=Mus musculus GN=Slc25a14 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 42/130 (32.31%), Postives = 71/130 (54.62%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            G L LY G+   LL       I   +Y+SL+  +   R  D T+++++ CG +SG+ SST   P D+++ RMQ +G+     ++   ++G+F  I Q EG +GL+RG++P   +    VG+    Y+  K
Sbjct:   99 GILALYSGIAPALLRQASYGTIKIGIYQSLKRLFVE-RLEDETLLINMICGVVSGVISSTIANPTDVLKIRMQAQGS-----LFQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGVELPVYDITK 222          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC_MACFA (Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 2
Query:   17 YKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTV---MVSLACGSLSGIASSTATFPIDLVRRRMQLEG------AGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE 382
            YKGL  TL+ + P   + FS Y SL+  ++   P +      + +L CGS +G+ S T T+P+DL ++R+Q+ G      A G+ R Y  GL+   + ++Q EG  G ++G+ P   K     G +F  YE
Sbjct:  175 YKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAMPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRY-KGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFWYE 304          
The following BLAST results are available for this feature:
BLAST of CX298422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
GDC_HUMAN7.596e-1533.56Graves disease carrier protein OS=Homo sapiens GN=... [more]
TPC_BOVIN9.921e-1534.56Mitochondrial thiamine pyrophosphate carrier OS=Bo... [more]
TPC1_CANGA9.921e-1532.87Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2542_DANRE1.296e-1436.30Solute carrier family 25 member 42 OS=Danio rerio ... [more]
TPC_MOUSE2.210e-1434.35Mitochondrial thiamine pyrophosphate carrier OS=Mu... [more]
TPC_HUMAN2.210e-1433.59Mitochondrial thiamine pyrophosphate carrier OS=Ho... [more]
S2541_HUMAN2.210e-1436.30Solute carrier family 25 member 41 OS=Homo sapiens... [more]
YBT5_SCHPO2.887e-1432.17Uncharacterized mitochondrial carrier C12D12.05c O... [more]
UCP5_MOUSE2.887e-1432.31Brain mitochondrial carrier protein 1 OS=Mus muscu... [more]
TPC_MACFA2.887e-1433.59Mitochondrial thiamine pyrophosphate carrier OS=Ma... [more]

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Properties
Property NameValue
Genbank descriptionC06012A08SK RindPdig24 Citrus clementina cDNA clone C06012A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298422 ID=CX298422; Name=CX298422; organism=Citrus clementina; type=EST; length=716bp
AGGATTTTTGGGCTTGTATAAAGGACTTGGAGCGACATTATTGGGTGTTG
GACCTAGTATAGCAATAAGTTTTTCTGTCTATGAGTCTCTCAGATCTTTT
TGGCAGTCTTACAGGCCCAATGATCCCACTGTCATGGTCAGCCTTGCATG
CGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACTTTTCCTATTGATC
TTGTGAGGAGAAGAATGCAGTTAGAAGGGGCCGGTGGTCGAGCTCGTGTC
TACAATAATGGGTTGTTAGGGACTTTTCGGTACATAATTCAGTCTGAAGG
TCTGCAGGGCTTGTATAGAGGCATTTTGCCAGAATATTACAAGGTGGTTC
CTGGTGTTGGCATTGTTTTCATGACTTACGAGACATTGAAGATGCTTTTA
TCAAGTGTTCCTACCAGTTTTTAGTTACTTATCGCCGGCATATGTTATGC
TATAACATGTCCATGAGTTCATAAATTATTAAACCCACTTTGACATGAAA
GAAAATTCTGTTAGTTTGGATATACTAGGCAGCTAGAACAAATGTCTGGC
ATTTGCTGAGAGTAACAATGGTGGTAAATTTTGTCGTTGCCACTATATGA
TTTCCCCTTTTTCCTTCATTTCGGTCGGATAATGTATAGGTGGTTAGAAC
TGCGAGAGTGATATCAGTGTATCCTGTTTCACTGATTCGAGTCTGACATT
TCAATGTGTAGCATCA
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