CX298422

Overview
NameCX298422
Unique NameCX298422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: ORNT1_MOUSE (Mitochondrial ornithine transporter 1 OS=Mus musculus GN=Slc25a15 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 47/134 (35.07%), Postives = 67/134 (50.00%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLAC-GSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G LG Y GL +TLL   P     F  YE  RSF+ S R  D    V L   G   GI    A +P+D ++ R+Q+    G+      GL+ TF  I+++EG+  LY G+ P   +  P  G +F+ YE  + L+
Sbjct:  165 GPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPVPLMLSGGFGGICLWLAVYPVDCIKSRIQVLSMTGK----QTGLVRTFLSIVKNEGITALYSGLKPTMIRAFPANGALFLAYEYSRKLM 294          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TXTP_BOVIN (Tricarboxylate transport protein, mitochondrial OS=Bos taurus GN=SLC25A1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 48/137 (35.04%), Postives = 76/137 (55.47%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDP-TVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSV 409
            G  G Y+GL AT+L  G +  I F V  SLR++++   PN P   +++   G+++G AS     P+D+++ RMQ    G  A  Y N  L     I+++EGL+  Y+G +P   +V   V IVF+ Y+ +  LL+ V
Sbjct:  176 GLKGTYQGLTATVLKQGSNQGIRFFVMTSLRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ----GLEAHKYRN-TLDCGLQILRNEGLKAFYKGTVPRLGRVCLDVAIVFIIYDEVVKLLNKV 307          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_ASPFU (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus fumigatus GN=tpc1 PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 44/138 (31.88%), Postives = 72/138 (52.17%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNN-----GLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE-TLKML 397
            G  G ++G  A +  + P + + F+ YESLR        N P      A G ++ + + +  FP+DLVR+R+Q++G      V+ N     G+  T   I++++G++GLYRG+     K  P   I   TYE +LK+L
Sbjct:  174 GPAGFFRGCSAAVGQIVPYMGLFFATYESLRPVLSGLE-NMPFGSGDAAAGVIASVLAKSGVFPLDLVRKRLQVQGPTRTLYVHRNIPEYRGVFSTIAMIVRTQGVRGLYRGLTVSLIKAAPASAITMWTYERSLKLL 310          

HSP 2 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 2
Query:    2 GFLGLYKG-LGATLLGVGPSIAISFSVYESLRSFWQSYRPND-PTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSV 409
            G  GL+KG + A L+ V    A+ F+ Y +         P+  P  + S   G+++G  ++ +T+P+DL+R R     A G  R+Y + LL + R I +SEG  G +RG      ++VP +G+ F TYE+L+ +LS +
Sbjct:   78 GITGLWKGNIPAELMYVCYG-ALQFTAYRTTTQILAQLDPHRLPPALESFVSGAVAGGLATASTYPLDLLRTRF---AAQGTERIYTS-LLASVRDIARSEGPAGFFRGCSAAVGQIVPYMGLFFATYESLRPVLSGL 210          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TXTP_RAT (Tricarboxylate transport protein, mitochondrial OS=Rattus norvegicus GN=Slc25a1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDP-TVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSV 409
            G  G Y+GL AT+L  G + AI F V  SLR+++Q   PN P   +++   G+++G AS     P+D+++ RMQ    G  A  Y N  L     I+++EG +  Y+G +P   +V   V IVF+ Y+ +  LL+ V
Sbjct:  176 GLKGTYQGLTATVLKQGSNQAIRFFVMTSLRNWYQGDNPNKPMNPLITGVFGAVAGAASVFGNTPLDVIKTRMQ----GLEAHKYRN-TLDCGVQILKNEGPKAFYKGTVPRLGRVCLDVAIVFVIYDEVVKLLNKV 307          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TXTP_HUMAN (Tricarboxylate transport protein, mitochondrial OS=Homo sapiens GN=SLC25A1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 47/137 (34.31%), Postives = 76/137 (55.47%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDP-TVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSV 409
            G  G Y+GL AT+L  G + AI F V  SLR++++   PN P   +++   G+++G AS     P+D+++ RMQ   A      ++ GL      I++ EGL+  Y+G +P   +V   V IVF+ Y+ +  LL+ V
Sbjct:  176 GLKGTYQGLTATVLKQGSNQAIRFFVMTSLRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGL-----QILKKEGLKAFYKGTVPRLGRVCLDVAIVFVIYDEVVKLLNKV 307          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2543_MOUSE (Solute carrier family 25 member 43 OS=Mus musculus GN=Slc25a43 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 45/136 (33.09%), Postives = 70/136 (51.47%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAG----GRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKML 397
            GFL LY+G+  T+LG  P  A S  VY +L   W   R     +  + A   ++   S T +FP D V+R+MQ +       G   V+ +G    FR I++++G+ GL+ G+     KVVP  G++F  +E  K +
Sbjct:  159 GFLALYRGVSLTVLGAVPFSAGSLLVYMNLEKVWNGPRDRFSHLQ-NFANVCVAAAVSQTLSFPFDTVKRKMQAQSPYLPHYGGVDVHFSGAADCFRQIVKTQGVLGLWNGLTANLLKVVPYFGVMFSMFEFCKRI 293          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: ORNT1_HUMAN (Mitochondrial ornithine transporter 1 OS=Homo sapiens GN=SLC25A15 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 45/134 (33.58%), Postives = 67/134 (50.00%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLAC-GSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 400
            G LG Y GL +TLL   P     F  YE  RSF+ S R  D    V L   G + GI    A +P+D ++ R+Q+    G+      G + TF  ++++EG+  LY G+ P   +  P  G +F+ YE  + L+
Sbjct:  165 GPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPVPLMLSGGVGGICLWLAVYPVDCIKSRIQVLSMSGKQA----GFIRTFINVVKNEGITALYSGLKPTMIRAFPANGALFLAYEYSRKLM 294          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_COCIM (Mitochondrial thiamine pyrophosphate carrier 1 OS=Coccidioides immitis GN=TPC1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 40/145 (27.59%), Postives = 73/145 (50.34%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLR----SFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNN-----GLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSV 409
            G  G ++G+ A +  + P + + F+ YES+R    S    +   D T       G ++ + + T  FP+DLVR+R+Q++G      ++ N     G+L T + +++  G++GLYRG+     K  P   +   TYE +  +L  +
Sbjct:  175 GSRGFFRGVSAAVAQIVPYMGLFFATYESVRVPISSLHLPFGSGDATA------GVIASVIAKTGVFPLDLVRKRLQVQGPTRSRYIHQNIPEYNGVLSTMKMVLRDGGVRGLYRGLTVSLIKAAPASAVTMWTYERVLKILKEI 313          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_ASPOR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus oryzae GN=tpc1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 39/129 (30.23%), Postives = 67/129 (51.94%), Query Frame = 2
Query:   11 GLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNN-----GLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE 382
            G ++G  A +  + P + + F+ YESLR        + P      A G ++ + + T  FP+DLVR+R+Q++G      V+ N     G+  T   I++++G++GLYRG+    +K  P   +   TYE
Sbjct:  177 GFFRGCSAAVGQIVPYMGLFFATYESLRPVMSGLH-DLPFGSGDAAAGVVASVLAKTGVFPLDLVRKRLQVQGPTRSKYVHRNIPEYQGVYNTMAMIVRTQGMRGLYRGLTVSLFKAAPASAVTMWTYE 304          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_EMENI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Emericella nidulans GN=tpc1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMV----SLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNN-----GLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE-TLKML 397
            G +G ++G  A +  + P + + F+ YE+LR    +     P  +       A G ++ + + T  FP+DLVR+R+Q++G      V+ N     G+  T   I +++GL+GLYRG+     K  P   +   TYE  LK+L
Sbjct:  176 GTVGFFRGCSAAVGQIVPYMGLFFATYEALRPVMATAPELSPIPLPPGSGDAAAGIVASVLAKTGVFPLDLVRKRLQVQGPTRALYVHRNIPEYRGVFNTMGLIFRTQGLRGLYRGLTVSLVKAAPASAVTMWTYERALKLL 317          

HSP 2 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 47/139 (33.81%), Postives = 75/139 (53.96%), Query Frame = 2
Query:    2 GFLGLYKG-LGATLLGVGPSIAISFSVYESLRSFWQSYRPND-PTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSVP 412
            G  GL+KG + A LL V     I F+ Y +         P+  P  + S   G+L G  ++ AT+P+DL+R R   +G+G   RVY + L  + R I ++EG  G +RG      ++VP +G+ F TYE L+ ++++ P
Sbjct:   78 GLTGLWKGNIPAELLYVCYG-GIQFTTYRTTTQLLAQLDPHRLPQPIESFISGALGGGIATAATYPLDLLRTRFAAQGSGDN-RVYES-LFASLRDIAKTEGTVGFFRGCSAAVGQIVPYMGLFFATYEALRPVMATAP 213          
The following BLAST results are available for this feature:
BLAST of CX298422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
ORNT1_MOUSE1.871e-1335.07Mitochondrial ornithine transporter 1 OS=Mus muscu... [more]
TXTP_BOVIN3.192e-1335.04Tricarboxylate transport protein, mitochondrial OS... [more]
TPC1_ASPFU3.192e-1331.88Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TXTP_RAT4.168e-1335.77Tricarboxylate transport protein, mitochondrial OS... [more]
TXTP_HUMAN4.168e-1334.31Tricarboxylate transport protein, mitochondrial OS... [more]
S2543_MOUSE4.168e-1333.09Solute carrier family 25 member 43 OS=Mus musculus... [more]
ORNT1_HUMAN5.444e-1333.58Mitochondrial ornithine transporter 1 OS=Homo sapi... [more]
TPC1_COCIM7.110e-1327.59Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_ASPOR9.286e-1330.23Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_EMENI1.213e-1230.28Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06012A08SK RindPdig24 Citrus clementina cDNA clone C06012A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298422 ID=CX298422; Name=CX298422; organism=Citrus clementina; type=EST; length=716bp
AGGATTTTTGGGCTTGTATAAAGGACTTGGAGCGACATTATTGGGTGTTG
GACCTAGTATAGCAATAAGTTTTTCTGTCTATGAGTCTCTCAGATCTTTT
TGGCAGTCTTACAGGCCCAATGATCCCACTGTCATGGTCAGCCTTGCATG
CGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACTTTTCCTATTGATC
TTGTGAGGAGAAGAATGCAGTTAGAAGGGGCCGGTGGTCGAGCTCGTGTC
TACAATAATGGGTTGTTAGGGACTTTTCGGTACATAATTCAGTCTGAAGG
TCTGCAGGGCTTGTATAGAGGCATTTTGCCAGAATATTACAAGGTGGTTC
CTGGTGTTGGCATTGTTTTCATGACTTACGAGACATTGAAGATGCTTTTA
TCAAGTGTTCCTACCAGTTTTTAGTTACTTATCGCCGGCATATGTTATGC
TATAACATGTCCATGAGTTCATAAATTATTAAACCCACTTTGACATGAAA
GAAAATTCTGTTAGTTTGGATATACTAGGCAGCTAGAACAAATGTCTGGC
ATTTGCTGAGAGTAACAATGGTGGTAAATTTTGTCGTTGCCACTATATGA
TTTCCCCTTTTTCCTTCATTTCGGTCGGATAATGTATAGGTGGTTAGAAC
TGCGAGAGTGATATCAGTGTATCCTGTTTCACTGATTCGAGTCTGACATT
TCAATGTGTAGCATCA
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