CX298422

Overview
NameCX298422
Unique NameCX298422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: GDC_RAT (Graves disease carrier protein (Fragment) OS=Rattus norvegicus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 46/139 (33.09%), Postives = 73/139 (52.52%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRP--------NDPTVMV-----SLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLL--GTFRYIIQSEGL-QGLYRGILPEYYKVVPGVGIVF 370
            GFLG Y+GL  T+LG+ P  ++SF  + +L+S   SY P        ++P V+V     +L CG ++   + T ++P D+ RRRMQL   G     +   L    T +Y+    G+ +GLYRG+   Y + +P   + F
Sbjct:  187 GFLGFYRGLMPTILGMAPYASVSFFTFGTLKSVGLSYAPTLLGRPSSDNPNVLVLKTHINLLCGGVARAIAQTISYPFDVTRRRMQL---GAVLPEFEKCLTMRETMKYVYGHHGIRRGLYRGLSLNYIRCIPSQAVAF 322          

HSP 2 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTA---TFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSE-GLQGLYRGILPEYYKVVPGVGIVFMTYETLKML-LSSVPT 415
            G+LGLYKG GA ++ + P  AI F  +E  ++F  +       V   L  GS++G  S TA   T+P+D+VR R+  +  G       +G++  F+ I   E G  G YRG++P    + P   + F T+ TLK + LS  PT
Sbjct:   88 GYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHVH-RLMAGSMAGKMSMTAVICTYPLDVVRVRLAFQVKGEHT---YSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYASVSFFTFGTLKSVGLSYAPT 226          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: EAAC_ARATH (Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=EAAC PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 44/136 (32.35%), Postives = 76/136 (55.88%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLR-SFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSS 406
            G    Y GLG +L+G+ P IA++F +++ ++ S  + YR    + +++    +  GIA+ T  +P+D VRR+MQ+ G   ++      +   F  II  +GL GLYRG LP   K +P   I   T++ +K L+++
Sbjct:  236 GIASFYYGLGPSLVGIAPYIAVNFCIFDLVKKSLPEEYRKKAQSSLLTAVLSA--GIATLTC-YPLDTVRRQMQMRGTPYKS------IPEAFAGIIDRDGLIGLYRGFLPNALKTLPNSSIRLTTFDMVKRLIAT 362          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: CMC1_YEAST (Calcium-binding mitochondrial carrier SAL1 OS=Saccharomyces cerevisiae GN=SAL1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 40/138 (28.99%), Postives = 72/138 (52.17%), Query Frame = 2
Query:   17 YKGLGATLLGVGPSIAISFSVYESLRSFWQSYR------PNDPTVM---VSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLS 403
            Y+G+   ++G+ P  A+    + +L+ ++ + +      P D   +   V L  G+ SG   ++  +PI+L+R R+Q +G      VYN G        ++ EG QGL++G++P   KV P V I ++ YE LK  ++
Sbjct:  407 YRGVTVGIVGIFPYAALDLGTFSALKKWYIAKQAKTLNLPQDQVTLSNLVVLPMGAFSGTVGASVVYPINLLRTRLQAQGTYAHPYVYN-GFKDVLLKTLEREGYQGLFKGLVPTLAKVCPAVSISYLCYENLKKFMN 543          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_PHANO (Mitochondrial thiamine pyrophosphate carrier 1 OS=Phaeosphaeria nodorum GN=TPC1 PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 40/132 (30.30%), Postives = 66/132 (50.00%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNN-----GLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE 382
            G  G ++GLGA +  + P + + F+ YESL+          P        G ++ + S TA +P+D  R+R+Q++G      V+ N     G+L T ++I + EG +G+YRG+     K  P   +   TYE
Sbjct:  175 GPTGFFRGLGAGVSQIVPYMGLFFASYESLKPVMADSPLPLPLGSSDAVAGVVASVVSKTAVYPLDTTRKRLQVQGPNRARYVHRNIPTYSGVLMTLQHIWKHEGRRGMYRGLTVSLLKAAPASAVTMWTYE 306          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_ASPTN (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNN-----GLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTY-ETLKML 397
            G  G ++G  A +  + P + + F+ YESLR    + + + P        G ++ + + T  FP+DLVR+R+Q++G      ++ N     G+  T   I++++G++GLYRG+    +K  P   +   TY ETL+ L
Sbjct:  173 GPAGFFRGCSAAVGQIVPYMGLFFATYESLRPSLATVQ-DLPFGSGDALAGMIASVLAKTGVFPLDLVRKRLQVQGPTRSRYIHRNIPEYRGVFNTLALILRTQGVRGLYRGLTVSLFKAAPASAVTMWTYEETLRAL 309          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TAAC_ARATH (Thylakoid ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=TAAC PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 44/136 (32.35%), Postives = 76/136 (55.88%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLR-SFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSS 406
            G    Y GLG +LL + P IAI+F V++ ++ S  + Y+    + +++    +   IA+ T  +P+D +RR+MQL+G   ++      +L  F  II  EG+ GLYRG +P   K +P   I   T++ +K L+++
Sbjct:  264 GVASFYNGLGPSLLSIAPYIAINFCVFDLVKKSLPEKYQQKTQSSLLTAVVAA--AIATGTC-YPLDTIRRQMQLKGTPYKS------VLDAFSGIIAREGVVGLYRGFVPNALKSMPNSSIKLTTFDIVKKLIAA 390          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_AJECN (Mitochondrial thiamine pyrophosphate carrier 1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TPC1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 43/138 (31.16%), Postives = 70/138 (50.72%), Query Frame = 2
Query:   11 GLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNN-----GLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSV 409
            G ++G  A +  + P + + F+ YE+LRS   S     P        G ++ + + T  FP+DLVR+R+Q++G   R  ++ N     G+  T R I+ S+G +GLYRG+     K  P   +   TYE +  LL  +
Sbjct:  176 GFFRGATAAIAQIVPYMGLFFAGYEALRSPIASLEL--PFGTGDAGAGVVASVIAKTGVFPLDLVRKRLQVQGPTRRRYIHTNIPVYEGVYRTIRAILASQGPKGLYRGLTVSLIKAAPASAVTMWTYEHVLGLLKDM 311          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: ORNT2_HUMAN (Mitochondrial ornithine transporter 2 OS=Homo sapiens GN=SLC25A2 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 45/138 (32.61%), Postives = 70/138 (50.72%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLAC-GSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE-TLKMLLSSV 409
            G LG Y GL +TLL   P     F  YE  RSF+ S R  D    V L   G ++GI      FP+D ++ R+Q+    G+      G +GT   ++++EG+  LY G+     + +P  G +F+ YE + KM++  +
Sbjct:  165 GPLGFYHGLSSTLLQEVPGYFFFFGGYELSRSFFASGRSKDELGPVHLMLSGGVAGICLWLVVFPVDCIKSRIQVLSMYGKQA----GFIGTLLSVVRNEGIVALYSGLKATMIRAIPANGALFVAYEYSRKMMMKQL 298          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: KMCP1_MACFA (Kidney mitochondrial carrier protein 1 OS=Macaca fascicularis GN=SLC25A30 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 40/130 (30.77%), Postives = 65/130 (50.00%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            G   LY G+   +L       I    Y+SL+  +   RP D T+++++ CG LSG+ SST   P D+++ RMQ + +         G++G F  I Q EG +GL++G+     +    VG+    Y+  K
Sbjct:   64 GLKALYSGIAPAMLRQSSYGTIKIGTYQSLKRLFVE-RPEDETLLINVICGILSGVISSTIANPTDVLKIRMQAQSS-----TIQGGMIGNFMNIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVYDITK 187          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_VANPO (Mitochondrial thiamine pyrophosphate carrier 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TPC1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 43/143 (30.07%), Postives = 67/143 (46.85%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFR---------YIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLS 403
            G  G + G+  ++  V  S A  F  YE +R+ W                G++SG+ S T TFP+D +RRR+Q+  +    ++ NNG +G             I++ EG++ L+RGI     K VP   I    YE L  +L+
Sbjct:  163 GLGGFFHGVATSMANVTVSTAAMFGTYEGIRARWPETNAG--------TAGAISGVISRTITFPLDTIRRRLQIRTSSELGQMTNNGYIGKHMQRSAITLCVQIVRDEGVKVLFRGIGLGLLKSVPNTAINLWVYENLMRVLT 297          
The following BLAST results are available for this feature:
BLAST of CX298422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
GDC_RAT1.213e-1233.09Graves disease carrier protein (Fragment) OS=Rattu... [more]
EAAC_ARATH1.213e-1232.35Probable envelope ADP,ATP carrier protein, chlorop... [more]
CMC1_YEAST1.213e-1228.99Calcium-binding mitochondrial carrier SAL1 OS=Sacc... [more]
TPC1_PHANO2.069e-1230.30Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_ASPTN2.069e-1229.71Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TAAC_ARATH2.069e-1232.35Thylakoid ADP,ATP carrier protein, chloroplastic O... [more]
TPC1_AJECN2.702e-1231.16Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
ORNT2_HUMAN3.529e-1232.61Mitochondrial ornithine transporter 2 OS=Homo sapi... [more]
KMCP1_MACFA3.529e-1230.77Kidney mitochondrial carrier protein 1 OS=Macaca f... [more]
TPC1_VANPO4.609e-1230.07Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06012A08SK RindPdig24 Citrus clementina cDNA clone C06012A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298422 ID=CX298422; Name=CX298422; organism=Citrus clementina; type=EST; length=716bp
AGGATTTTTGGGCTTGTATAAAGGACTTGGAGCGACATTATTGGGTGTTG
GACCTAGTATAGCAATAAGTTTTTCTGTCTATGAGTCTCTCAGATCTTTT
TGGCAGTCTTACAGGCCCAATGATCCCACTGTCATGGTCAGCCTTGCATG
CGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACTTTTCCTATTGATC
TTGTGAGGAGAAGAATGCAGTTAGAAGGGGCCGGTGGTCGAGCTCGTGTC
TACAATAATGGGTTGTTAGGGACTTTTCGGTACATAATTCAGTCTGAAGG
TCTGCAGGGCTTGTATAGAGGCATTTTGCCAGAATATTACAAGGTGGTTC
CTGGTGTTGGCATTGTTTTCATGACTTACGAGACATTGAAGATGCTTTTA
TCAAGTGTTCCTACCAGTTTTTAGTTACTTATCGCCGGCATATGTTATGC
TATAACATGTCCATGAGTTCATAAATTATTAAACCCACTTTGACATGAAA
GAAAATTCTGTTAGTTTGGATATACTAGGCAGCTAGAACAAATGTCTGGC
ATTTGCTGAGAGTAACAATGGTGGTAAATTTTGTCGTTGCCACTATATGA
TTTCCCCTTTTTCCTTCATTTCGGTCGGATAATGTATAGGTGGTTAGAAC
TGCGAGAGTGATATCAGTGTATCCTGTTTCACTGATTCGAGTCTGACATT
TCAATGTGTAGCATCA
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