CX298422

Overview
NameCX298422
Unique NameCX298422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_MAGGR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Magnaporthe grisea GN=TPC1 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNN-----GLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE 382
            G+ G ++G+G  +    P + I F+ YESLR+     +       ++LA  + S +A  TA FP+DLVRRR+Q++G      V+ N     G   T   I ++EG +GLYRG+     K  P   +   TYE
Sbjct:  182 GYRGFFRGIGPAVGQTFPFMGIFFAAYESLRAPLADLKLPFWGGQLALASMTASTLAK-TAVFPLDLVRRRIQVQGPTRSKYVHKNIPEYKGTFSTISTIARTEGFRGLYRGLTVSLIKSAPASAVTMWTYE 312          

HSP 2 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 49/144 (34.03%), Postives = 73/144 (50.69%), Query Frame = 2
Query:    2 GFLGLYKG-LGATLLGVGPSIAISFSVYESLRSFWQSYRPND---PTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSVPTSF 421
            G  GL+KG + A LL +  S A+ F+ Y S           D   P    S   G+ +G+ S+T T+P+DL+R R   +G+G   RVY + L      I + EG +G +RGI P   +  P +GI F  YE+L+  L+ +   F
Sbjct:   82 GITGLWKGNVPAELLYITYS-AVQFATYRSAAQLLHRVAGEDRQLPAAAESFVAGAAAGVTSTTVTYPLDLLRTRFAAQGSGD-DRVYQS-LRRAVADIWRDEGYRGFFRGIGPAVGQTFPFMGIFFAAYESLRAPLADLKLPF 222          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2536_MOUSE (Solute carrier family 25 member 36 OS=Mus musculus GN=Slc25a36 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 2
Query:   14 LYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTF---RYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSVPTS 418
            L++GLG  L+GV PS AI F+ Y + +         D T  V +A  +++G  + TAT PI L++ R+QL+     AR      +G F   R + Q++GL+G YRG+   Y  +   V I F+ YE++K  L    T+
Sbjct:   80 LFRGLGPNLVGVAPSRAIYFAAYSNCKEKLNGVFDPDST-QVHMASAAMAGFTAITATNPIWLIKTRLQLD-----ARTRGEKQMGAFECVRKVYQTDGLRGFYRGMSASYAGISETV-IHFVIYESIKQKLLECKTA 210          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_PICGU (Mitochondrial thiamine pyrophosphate carrier 1 OS=Pichia guilliermondii GN=TPC1 PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 42/129 (32.56%), Postives = 60/129 (46.51%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETL 388
            G  GLY G   TLL +G +  + F  YE  R     Y+ N P   +   CG  +G +S   TFP+D +R+RMQ+       R     ++G  R I++ EGL G Y+G      K  P   +    YE +
Sbjct:  168 GLAGLYMGAKPTLLSLGLNSGLMFWTYEIAREVSAQYKDNIP--FIEGFCGFFAGASSKGITFPLDTLRKRMQM-------RSSKTSIIGLARTILRREGLFGFYKGFGISLIKTAPTSAVSLFVYEVV 287          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: SAMC_MOUSE (S-adenosylmethionine mitochondrial carrier protein OS=Mus musculus GN=Slc25a26 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 42/136 (30.88%), Postives = 68/136 (50.00%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSV 409
            G  GLY+G  +T+L   P   + F ++ESL++ W   R +      S  CG+ +G  ++  T P+D+ + R+ L  AG    V N  +L     + +S+GL GL+ G+LP    +  G  I    Y+  + LL  V
Sbjct:  136 GIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWAWRRGHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTAVGN--VLSAMHGVWRSQGLAGLFAGVLPRMAAISMGGFIFLGAYDQARSLLLEV 269          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: MCFC_DICDI (Mitochondrial substrate carrier family protein C OS=Dictyostelium discoideum GN=mcfC PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 41/126 (32.54%), Postives = 61/126 (48.41%), Query Frame = 2
Query:   17 YKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPND-PTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            Y+GLGA++    P   ++  VYE L+        N+ PT    L C S S +      +P  +V+ R+  +G+      Y  GL      II+ EG  GLY+GI+P + K +P   I F+ YE  K
Sbjct:  335 YRGLGASITATIPHSGVNMMVYEFLKHKVIKMTGNEFPTAGQLLVCASTSSVCGQLVGYPFHVVKSRLITQGSSVNQEKYT-GLFDGLTKIIKKEGPIGLYKGIVPSFMKSIPSHSITFIVYEGFK 459          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: KMCP1_HUMAN (Kidney mitochondrial carrier protein 1 OS=Homo sapiens GN=SLC25A30 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 40/130 (30.77%), Postives = 64/130 (49.23%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            G   LY G+   +L       I    Y+SL+  +   RP D T+ +++ CG LSG+ SST   P D+++ RMQ      ++     G++G F  I Q EG +GL++G+     +    VG+    Y+  K
Sbjct:   64 GLKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFIE-RPEDETLPINVICGILSGVISSTIANPTDVLKIRMQ-----AQSNTIQGGMIGNFMNIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVYDITK 187          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: MCFX_DICDI (Mitochondrial substrate carrier family protein X OS=Dictyostelium discoideum GN=mcfX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSS 406
            G  GLYKG  +TLL   P   I FS+Y  ++         +  +   L CG  +G  +++ + P D+++ R+Q++   G    +  G+   FR  IQSEG + L++G+LP    + P  GI  + YE  K   +S
Sbjct:  167 GIKGLYKGTASTLLRDVPFSMIYFSIYGRMKHNLTDQETGEIGLPKILLCGITAGSIAASVSTPFDVIKTRIQVKP--GPNDPHYKGIADCFRKTIQSEGPKALFKGVLPRVCIISPLFGITLVVYEIQKSFYAS 299          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 42/137 (30.66%), Postives = 68/137 (49.64%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQS---YRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLS 403
            G  G+++GLGATL+   P+ A  F  YE  R F  S      N  + +  +A G   G++  T T+P D+V+  MQ +      R Y N ++     I + +G+ G Y+G  P + + VP     F+ YE  + ++S
Sbjct:  165 GVRGVFQGLGATLVRDIPANACYFGAYELCRDFLASKDNISVNQLSSLQIMAAGGAGGVSYWTLTYPADVVKSTMQTDAIVKSQRKYKN-MIDCASKIYKQQGIAGFYKGFTPCFIRSVPANAACFVLYEKARQIMS 300          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2540_XENTR (Solute carrier family 25 member 40 OS=Xenopus tropicalis GN=slc25a40 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 43/132 (32.58%), Postives = 65/132 (49.24%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLR-SFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVY----NNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE 382
            G+L L+KG G T+L   P  A+ +  YE ++ S  Q Y    PT  +S   G++SG  ++  T P D+V+ R Q+E        Y    ++      R I+   G  GL+ G++P   KV P   I+  TYE
Sbjct:  192 GWLALWKGWGPTVLRDVPFSALYWHNYELVKQSLCQRYNTLQPTFAISFTAGAVSGSIAAIVTLPFDVVKTRRQVEVGELEMFTYSQKRSSSTWKLMRAIVIENGFGGLFAGLIPRLIKVAPACAIMISTYE 323          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: YIA6_YEAST (Uncharacterized mitochondrial carrier YIL006W OS=Saccharomyces cerevisiae GN=YIL006W PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = 2
Query:   11 GLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKM 394
            GLYKGL   +LG  P+  I FSVYE  + F+    P    V  S A    +G AS+T T PI +V+ R+ L+   G    +  G    FR +   EG + LY G++P    +   V I F  YE LK+
Sbjct:  137 GLYKGLVPIVLGYFPTWMIYFSVYEFSKKFFHGIFPQFDFVAQSCA-AITAGAASTTLTNPIWVVKTRLMLQSNLGEHPTHYKGTFDAFRKLFYQEGFKALYAGLVPSLLGLF-HVAIHFPIYEDLKV 262          
The following BLAST results are available for this feature:
BLAST of CX298422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
TPC1_MAGGR4.609e-1234.09Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2536_MOUSE6.019e-1234.78Solute carrier family 25 member 36 OS=Mus musculus... [more]
TPC1_PICGU1.341e-1132.56Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
SAMC_MOUSE1.341e-1130.88S-adenosylmethionine mitochondrial carrier protein... [more]
MCFC_DICDI1.341e-1132.54Mitochondrial substrate carrier family protein C O... [more]
KMCP1_HUMAN1.341e-1130.77Kidney mitochondrial carrier protein 1 OS=Homo sap... [more]
MCFX_DICDI1.751e-1131.11Mitochondrial substrate carrier family protein X O... [more]
MCFG_DICDI1.751e-1130.66Mitochondrial substrate carrier family protein G O... [more]
S2540_XENTR2.287e-1132.58Solute carrier family 25 member 40 OS=Xenopus trop... [more]
YIA6_YEAST2.987e-1136.72Uncharacterized mitochondrial carrier YIL006W OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC06012A08SK RindPdig24 Citrus clementina cDNA clone C06012A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298422 ID=CX298422; Name=CX298422; organism=Citrus clementina; type=EST; length=716bp
AGGATTTTTGGGCTTGTATAAAGGACTTGGAGCGACATTATTGGGTGTTG
GACCTAGTATAGCAATAAGTTTTTCTGTCTATGAGTCTCTCAGATCTTTT
TGGCAGTCTTACAGGCCCAATGATCCCACTGTCATGGTCAGCCTTGCATG
CGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACTTTTCCTATTGATC
TTGTGAGGAGAAGAATGCAGTTAGAAGGGGCCGGTGGTCGAGCTCGTGTC
TACAATAATGGGTTGTTAGGGACTTTTCGGTACATAATTCAGTCTGAAGG
TCTGCAGGGCTTGTATAGAGGCATTTTGCCAGAATATTACAAGGTGGTTC
CTGGTGTTGGCATTGTTTTCATGACTTACGAGACATTGAAGATGCTTTTA
TCAAGTGTTCCTACCAGTTTTTAGTTACTTATCGCCGGCATATGTTATGC
TATAACATGTCCATGAGTTCATAAATTATTAAACCCACTTTGACATGAAA
GAAAATTCTGTTAGTTTGGATATACTAGGCAGCTAGAACAAATGTCTGGC
ATTTGCTGAGAGTAACAATGGTGGTAAATTTTGTCGTTGCCACTATATGA
TTTCCCCTTTTTCCTTCATTTCGGTCGGATAATGTATAGGTGGTTAGAAC
TGCGAGAGTGATATCAGTGTATCCTGTTTCACTGATTCGAGTCTGACATT
TCAATGTGTAGCATCA
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