CX298422

Overview
NameCX298422
Unique NameCX298422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S238A_DANRE (Solute carrier family 25 member 38-A OS=Danio rerio GN=slc25a38a PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 2
Query:  149 CGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            CGSLSG  S+    P+DLV+ R+Q   +G +      G++  F  ++++E L GL+RG+ P + + +PGVGI F TY TLK
Sbjct:   15 CGSLSGTCSTLLFQPLDLVKTRLQTLHSGVQPGTGRVGMVTVFVNVLRTEKLLGLWRGVSPSFVRCIPGVGIYFSTYFTLK 95          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: TPC1_CHAGB (Mitochondrial thiamine pyrophosphate carrier 1 OS=Chaetomium globosum GN=TPC1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 43/142 (30.28%), Postives = 68/142 (47.89%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNN------GLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSV 409
            GF G++    A ++   P ++  F+ YE+LR          P    S    +++ + + + TFP+DLVR+R+Q++       V+ N      G +G  R I+Q EGL+GLYRG+     K  P   +   TYE      S V
Sbjct:  180 GFFGVWDRAWAQII---PYMSFFFATYETLRPHLSELEL--PFSSSSAVARTMASVMAKSRTFPLDLVRKRIQVQSPTRGRYVHKNIPEYYGGTVGALRTILQREGLRGLYRGLTVSLLKAAPASAVTMWTYERALKFYSGV 316          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2543_DANRE (Solute carrier family 25 member 43 OS=Danio rerio GN=slc25a43 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 40/136 (29.41%), Postives = 69/136 (50.74%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAG----GRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKML 397
            G   LY+G   T+LG  P     ++VY +L   WQ  R    T + +   G L+   + T +FP + V+++MQ +       G   V+ NG+   FR +I+++G+  L+ G+     K+VP  G++F  +E  K +
Sbjct:  158 GLQALYRGFSLTVLGAVPFSVGCYAVYINLDKLWQE-RHVRFTSLQNFINGCLAAGVAQTLSFPFETVKKKMQAQSLVLPHCGGVDVHFNGMADCFRQVIKNKGVMALWSGLTANMVKIVPYFGLLFSCFEMCKQV 292          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2536_HUMAN (Solute carrier family 25 member 36 OS=Homo sapiens GN=SLC25A36 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 45/135 (33.33%), Postives = 70/135 (51.85%), Query Frame = 2
Query:   14 LYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSVPTS 418
            L++GLG  L+GV PS AI F+ Y + +         D T  V +   +++G  + TAT PI L++ R+QL+      R    G     R + Q++GL+G YRG+   Y  +   V I F+ YE++K  L    T+
Sbjct:   80 LFRGLGPNLVGVAPSRAIYFAAYSNCKEKLNDVFDPDST-QVHMISAAMAGFTAITATNPIWLIKTRLQLDARNRGER--RMGAFECVRKVYQTDGLKGFYRGMSASYAGISETV-IHFVIYESIKQKLLEYKTA 210          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2533_HUMAN (Solute carrier family 25 member 33 OS=Homo sapiens GN=SLC25A33 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 2
Query:   14 LYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSVP 412
            L++GLG  L+GV PS A+ F+ Y   +  +      +  ++   + GS + I +S    PI +V+ RMQLE     ++  N   L   RY+ Q+EG++G YRG+   Y  +   + I F  YE+LK  L   P
Sbjct:   90 LFRGLGPNLVGVAPSRAVYFACYSKAKEQFNGIFVPNSNIVHIFSAGSAAFITNSLMN-PIWMVKTRMQLEQKVRGSKQMNT--LQCARYVYQTEGIRGFYRGLTASYAGISETI-ICFAIYESLKKYLKEAP 218          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2533_BOVIN (Solute carrier family 25 member 33 OS=Bos taurus GN=SLC25A33 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 47/134 (35.07%), Postives = 71/134 (52.99%), Query Frame = 2
Query:   14 LYKGLGATLLGVGPSIAISFSVYESLRSFWQS-YRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSVP 412
            L++GLG  L+GV PS A+ F+ Y   +  +   + PN   V V  + GS + + +S    PI +V+ RMQLE     ++  N   L   RY+ Q+EG++G YRG+   Y  +   + I F  YE+LK  L   P
Sbjct:   90 LFRGLGPNLVGVAPSRAVYFACYSKAKEQFNGVFVPNSNIVHV-FSAGSAAFVTNSLMN-PIWMVKTRMQLERKVRGSKQMNT--LQCARYVYQTEGIRGFYRGLTASYAGISETI-ICFAIYESLKKYLKEAP 218          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2540_XENLA (Solute carrier family 25 member 40 OS=Xenopus laevis GN=slc25a40 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLR-SFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGT----FRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYE 382
            G+L L+KG G T+L   P  A+ +  YE ++ S  Q Y    PT  +S   G++SG  ++  T P D+V+ R Q+E        Y++    +       I+   G  GL+ G++P   KV P   I+  TYE
Sbjct:  192 GWLSLWKGWGPTVLRDVPFSALYWHNYELVKQSLCQRYNTLQPTFAISFTAGAVSGSIAAIVTLPFDVVKTRRQVEVGELEVFTYSHKRSSSTWKLMSAIVAENGFGGLFAGLVPRLIKVAPACAIMISTYE 323          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: S2533_DANRE (Solute carrier family 25 member 33 OS=Danio rerio GN=slc25a33 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 2
Query:   14 LYKGLGATLLGVGPSIAISFSVY-ESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKMLLS 403
            L++GLG  L+GV PS AI F+ Y +S  +F   + PN   V +S A    +   +++   PI +V+ RMQLE      +  N   L   RY+ ++EG++G YRG+   Y  +   + I F+ YETLK  L+
Sbjct:   83 LFRGLGPNLVGVAPSRAIYFAAYSKSKETFNGIFVPNSGVVHMSSA--GFAAFITNSLMNPIWMVKTRMQLEKKARGEKKMN--ALQCARYVYKTEGMRGFYRGLTASYAGISETM-ICFLIYETLKKYLA 208          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: PM34_DICDI (Mitochondrial substrate carrier family protein Q OS=Dictyostelium discoideum GN=mcfQ PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 41/129 (31.78%), Postives = 70/129 (54.26%), Query Frame = 2
Query:   14 LYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMV-SLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLKML 397
            LY GL + L+G+G S  + +  Y  L+S     +       + +LA  +L+G A+   T PI +V  R+Q+          + G++G F+YII++EG  GLY+G++P    +V    + F++YE L+ L
Sbjct:   87 LYSGLKSALIGIGASSFVYYYWYTLLKSISLKLKNKQELGTIENLAIAALAGCANVLTTLPIWVVNTRLQINS--------DKGIVGQFKYIIKNEGFGGLYKGLIPALI-LVSNPSVQFVSYEKLRAL 206          
BLAST of CX298422 vs. ExPASy Swiss-Prot
Match: KMCP1_XENTR (Kidney mitochondrial carrier protein 1 OS=Xenopus tropicalis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 39/130 (30.00%), Postives = 65/130 (50.00%), Query Frame = 2
Query:    2 GFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLQGLYRGILPEYYKVVPGVGIVFMTYETLK 391
            G   LY G+   +L       I    Y+SL+  +    P D T+++++ CG LSG+ SS    P D+++ RMQ +G+     +   G++G F  I Q EG +GL++G+     +    VG+    Y+  K
Sbjct:   64 GVKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVDC-PEDETLVINVFCGVLSGVVSSCIANPTDVLKIRMQAQGS-----LIQGGMIGNFINIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVYDITK 187          
The following BLAST results are available for this feature:
BLAST of CX298422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
S238A_DANRE2.987e-1141.98Solute carrier family 25 member 38-A OS=Danio reri... [more]
TPC1_CHAGB3.901e-1130.28Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2543_DANRE3.901e-1129.41Solute carrier family 25 member 43 OS=Danio rerio ... [more]
S2536_HUMAN3.901e-1133.33Solute carrier family 25 member 36 OS=Homo sapiens... [more]
S2533_HUMAN3.901e-1133.08Solute carrier family 25 member 33 OS=Homo sapiens... [more]
S2533_BOVIN3.901e-1135.07Solute carrier family 25 member 33 OS=Bos taurus G... [more]
S2540_XENLA5.095e-1131.82Solute carrier family 25 member 40 OS=Xenopus laev... [more]
S2533_DANRE5.095e-1135.88Solute carrier family 25 member 33 OS=Danio rerio ... [more]
PM34_DICDI5.095e-1131.78Mitochondrial substrate carrier family protein Q O... [more]
KMCP1_XENTR5.095e-1130.00Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC06012A08SK RindPdig24 Citrus clementina cDNA clone C06012A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298422 ID=CX298422; Name=CX298422; organism=Citrus clementina; type=EST; length=716bp
AGGATTTTTGGGCTTGTATAAAGGACTTGGAGCGACATTATTGGGTGTTG
GACCTAGTATAGCAATAAGTTTTTCTGTCTATGAGTCTCTCAGATCTTTT
TGGCAGTCTTACAGGCCCAATGATCCCACTGTCATGGTCAGCCTTGCATG
CGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACTTTTCCTATTGATC
TTGTGAGGAGAAGAATGCAGTTAGAAGGGGCCGGTGGTCGAGCTCGTGTC
TACAATAATGGGTTGTTAGGGACTTTTCGGTACATAATTCAGTCTGAAGG
TCTGCAGGGCTTGTATAGAGGCATTTTGCCAGAATATTACAAGGTGGTTC
CTGGTGTTGGCATTGTTTTCATGACTTACGAGACATTGAAGATGCTTTTA
TCAAGTGTTCCTACCAGTTTTTAGTTACTTATCGCCGGCATATGTTATGC
TATAACATGTCCATGAGTTCATAAATTATTAAACCCACTTTGACATGAAA
GAAAATTCTGTTAGTTTGGATATACTAGGCAGCTAGAACAAATGTCTGGC
ATTTGCTGAGAGTAACAATGGTGGTAAATTTTGTCGTTGCCACTATATGA
TTTCCCCTTTTTCCTTCATTTCGGTCGGATAATGTATAGGTGGTTAGAAC
TGCGAGAGTGATATCAGTGTATCCTGTTTCACTGATTCGAGTCTGACATT
TCAATGTGTAGCATCA
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