CX298434

Overview
NameCX298434
Unique NameCX298434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: Y1984_MYCSK (Uncharacterized oxidoreductase Mkms_1984 OS=Mycobacterium sp. (strain KMS) GN=Mkms_1984 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  115 TWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 579
            +W  +      G+ RSIG+ N++     + +  S   P +NQ E HP   +  L +    +GI   A+ PLG              LD   + G+A+ + +T AQ++LRW IQ    VI +++  +R+  N +VFDFEL+ ++M  +  +D   R
Sbjct:  128 SWGGLMKAKQDGVARSIGVCNFNAEHLSNIIDLSFFTPAINQIELHPLLNQAELREVNAGYGIVTEAYGPLGVG----------RLLDHAAVTGVAQAHGKTPAQVLLRWSIQLGNVVIARSANPDRITSNLEVFDFELTDDEMATLNGLDEGTR 272          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: Y1938_MYCSS (Uncharacterized oxidoreductase Mmcs_1938 OS=Mycobacterium sp. (strain MCS) GN=Mmcs_1938 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 1
Query:  115 TWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYR 579
            +W  +      G+ RSIG+ N++     + +  S   P +NQ E HP   +  L +    +GI   A+ PLG              LD   + G+A+ + +T AQ++LRW IQ    VI +++  +R+  N +VFDFEL+ ++M  +  +D   R
Sbjct:  128 SWGGLMKAKQDGVARSIGVCNFNAEHLSNIIDLSFFTPAINQIELHPLLNQAELREVNAGYGIVTEAYGPLGVG----------RLLDHAAVTGVAQAHGKTPAQVLLRWSIQLGNVVIARSANPDRITSNLEVFDFELTDDEMATLNGLDEGTR 272          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: AK1A1_CRIGR (Alcohol dehydrogenase [NADP+] (Fragment) OS=Cricetulus griseus GN=AKR1A1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   73 DGVLEIDTTISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKR 417
            DG +  D+T   ET W A+E LV+ GLV+++G+SN++     D L+ + V+P V Q E HPY  ++ L+  CQ  G+ VTA++PLG +            L++PV+  LAEK+ R
Sbjct:  115 DGTIRYDSTHYKET-WKALEALVAKGLVKALGLSNFNSRQIDDILSVASVRPAVLQVECHPYLAQNELIAHCQARGLEVTAYSPLGSSDRAWRHPDEPVLLEEPVVLALAEKHGR 228          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: ARA1_YEAST (D-arabinose dehydrogenase [NAD(P)+] heavy chain OS=Saccharomyces cerevisiae GN=ARA1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 51/149 (34.23%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  154 VRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTNQPARF 600
            VR+IG+SN+ I      +   +VKP VNQ ETHP+  +  L KFC  H I +TA++PLG   A          L  P++K LAEKY  T   +++ + I++ T VIP++    R+  + +     L+K+++  +     KY    P RF
Sbjct:  186 VRAIGVSNFSIEYLERLIKECRVKPTVNQVETHPHLPQMELRKFCFMHDILLTAYSPLGSHGAPN--------LKIPLVKKLAEKYNVTGNDLLISYHIRQGTIVIPRSLNPVRISSSIEF--ASLTKDELQELNDFGEKY----PVRF 320          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: DKGB_YERPE (2,5-diketo-D-gluconic acid reductase B OS=Yersinia pestis GN=dkgB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  145 MGLVRSIGISNYDIFLTRDCLAYSKVKPVV-NQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTNQP 591
            +GL R IGISN+ I L +  +A    + +  NQ E  P  Q  ++V F +++GI VT++  L    A          L +PV+K +AE++  T AQ++L W +Q    VIP ++K   L  N       L+  DM +I ++DR  R   P
Sbjct:  120 LGLTRQIGISNFTIDLMKQAIAAVGAEEIATNQIELSPLLQNRNVVDFAKQNGIAVTSYMTLAYGKA----------LAEPVIKTIAEQHGATPAQVILSWAMQLGYGVIPSSTKAANLASNLLAQKLCLNAADMALIATLDRNERLVSP 259          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: YBN4_SCHPO (Uncharacterized oxidoreductase C8E4.04 OS=Schizosaccharomyces pombe GN=SPBC8E4.04 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 52/158 (32.91%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  100 ISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVS-CLDDPVLKGLAEKYKR--TVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSI 564
            + +E TW AME+L+  G VR IGISN++       L  +KVKP ++Q E HPY  +   ++  +K  I V+A++PL  A  N  +   +S  ++   L  +A       T A I + W ++R T+V+PK+    R+  NF      L+ ++M+ I +I
Sbjct:  142 VPIEETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKPTIHQMELHPYLPQTEYLEKHKKLQIHVSAYSPL--ANQNDAYNSDISKLIEHKTLVDIANARGEGITPANIAISWAVKRGTSVLPKSVNESRIVSNF--LYIPLTDKEMEAINNI 295          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: YHH5_SCHPO (Uncharacterized oxidoreductase C28F2.05 OS=Schizosaccharomyces pombe GN=SPBC28F2.05c PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 47/154 (30.52%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  115 TWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVVNQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKY 576
            +W A+      G +  IG+SNY+I    + ++     P +NQ E   +  R + + +C  HGI V A +PL               L D  L  L+ KY +T A I+LR+ +Q+  + I K S    + EN K   F L   DMDV+ + D ++
Sbjct:  121 SWRALLQHQKEGRINKIGVSNYNIHHLEEIISLGLPLPAINQVEFSAFNNRPTFLSYCFNHGILVQAFSPLTRGYR----------LSDIRLLDLSLKYNKTPANILLRYCLQKGVSPIFKASSFVHIHENVKAEQFMLDPSDMDVMDTWDEEF 264          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: DKGB_SALTY (2,5-diketo-D-gluconic acid reductase B OS=Salmonella typhimurium GN=dkgB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 50/165 (30.30%), Postives = 77/165 (46.67%), Query Frame = 1
Query:  100 ISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVV-NQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTNQP 591
            +S+E    A+ +    GL R IGISN+ I L    +A      +  NQ E  PY Q   +V + + HGI +T++  L    A          L D V+  +A K+  T AQ++L W +    +VIP +++ E L  +    D  L  ED + I ++D   R   P
Sbjct:  105 VSVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGADNIATNQIELSPYLQNRKVVDWAKAHGIHITSYMTLAYGKA----------LKDEVIARIAAKHNATPAQVILAWAMGEGYSVIPSSTRRENLASSLLAQDLHLDAEDKNAIAALDCNDRLVSP 259          
BLAST of CX298434 vs. ExPASy Swiss-Prot
Match: DKGB_SALTI (2,5-diketo-D-gluconic acid reductase B OS=Salmonella typhi GN=dkgB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 50/165 (30.30%), Postives = 76/165 (46.06%), Query Frame = 1
Query:  100 ISLETTWHAMEDLVSMGLVRSIGISNYDIFLTRDCLAYSKVKPVV-NQFETHPYFQRDSLVKFCQKHGICVTAHTPLGGAVANTEWFGTVSCLDDPVLKGLAEKYKRTVAQIVLRWGIQRNTAVIPKTSKLERLEENFKVFDFELSKEDMDVIKSIDRKYRTNQP 591
            +S+E    A+ +    GL R IGISN+ I L    +A      +  NQ E  PY Q   +V + + HGI +T++  L    A          L D V+  +A K+  T  Q++L W +    +VIP +++ E L  N    D  L  ED + I ++D   R   P
Sbjct:  105 VSVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGADHIATNQIELSPYLQNRKVVDWAKAHGIHITSYMTLAYGKA----------LKDEVIARIAVKHNATPVQVILAWAMGEGYSVIPSSTRRENLASNLLAQDLHLDAEDKNAIAALDCNDRLVSP 259          
The following BLAST results are available for this feature:
BLAST of CX298434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
Y1984_MYCSK1.172e-1529.68Uncharacterized oxidoreductase Mkms_1984 OS=Mycoba... [more]
Y1938_MYCSS1.172e-1529.68Uncharacterized oxidoreductase Mmcs_1938 OS=Mycoba... [more]
AK1A1_CRIGR1.172e-1539.13Alcohol dehydrogenase [NADP+] (Fragment) OS=Cricet... [more]
ARA1_YEAST1.999e-1534.23D-arabinose dehydrogenase [NAD(P)+] heavy chain OS... [more]
DKGB_YERPE5.816e-1533.332,5-diketo-D-gluconic acid reductase B OS=Yersinia... [more]
YBN4_SCHPO9.921e-1532.91Uncharacterized oxidoreductase C8E4.04 OS=Schizosa... [more]
YHH5_SCHPO3.770e-1430.52Uncharacterized oxidoreductase C28F2.05 OS=Schizos... [more]
DKGB_SALTY4.924e-1430.302,5-diketo-D-gluconic acid reductase B OS=Salmonel... [more]
DKGB_SALTI4.924e-1430.302,5-diketo-D-gluconic acid reductase B OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionC06012B08SK RindPdig24 Citrus clementina cDNA clone C06012B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298434 ID=CX298434; Name=CX298434; organism=Citrus clementina; type=EST; length=716bp
TCTACCTCGTCCATTTTCCTGTAGCCACAACAACACACTGGCGTTGGTAC
AACTGATAGTGCATTAGATGCGGATGGTGTGCTGGAGATAGACACAACTA
TATCATTGGAAACAACCTGGCATGCAATGGAGGATTTGGTTTCAATGGGT
TTAGTTCGAAGCATTGGGATCAGCAACTATGACATCTTTTTAACAAGAGA
CTGCTTAGCTTACTCCAAAGTGAAGCCGGTGGTGAATCAGTTTGAAACTC
ACCCATACTTCCAACGTGATTCTCTTGTCAAGTTCTGTCAGAAGCATGGG
ATATGTGTCACAGCTCATACTCCTCTAGGAGGTGCCGTAGCCAACACTGA
ATGGTTCGGTACTGTCTCATGTTTGGATGACCCCGTTTTGAAAGGTCTAG
CTGAGAAATACAAGAGGACTGTGGCCCAGATTGTTCTCAGGTGGGGCATC
CAACGGAACACAGCTGTCATCCCGAAGACGTCAAAGCTTGAGAGACTGGA
AGAGAATTTCAAAGTTTTTGACTTTGAGCTGAGCAAAGAAGACATGGATG
TGATTAAGAGCATTGACAGAAAATATCGAACCAACCAGCCTGCTAGGTTT
TGGGGCATAGATCTGTTTGCTTAAGTATGCTCATTGTTCTGGATAAGAAT
GTTTCTATGAGTTCAAAAATAAGTGATCAAACGTCCTTGATGTGTTTTAG
TATTAAAACATTTTAT
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