CX298435

Overview
NameCX298435
Unique NameCX298435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.161e-27
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YCT + Q+PCA G+ Y+G GPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM               R+  S ++Q      GFG     ING  ECG  + ++VQDR+  Y  YC   GV PG NL+C
Sbjct:  163 YCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 303          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.391e-27
Identity = 64/141 (45.39%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YCT + Q+PCA G+ Y+G GPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM               R+  S  +Q      GFG     ING  ECG  + ++VQDR+  Y  YC   GV PG NL+C
Sbjct:  163 YCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 303          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.041e-27
Identity = 64/141 (45.39%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YCT + Q+PCA G+ Y+G GPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+W+WM               R+  S  +Q      GFG     ING  ECG  + ++VQDR+  Y  YC   GV PG NL+C
Sbjct:  167 YCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDC 307          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.196e-27
Identity = 64/141 (45.39%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YCT + Q+PCA G+ Y+G GPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+ALW+WM               R+  S+ ++      GFG     ING  ECG    ++VQDR+  Y  YC   GV PG NL+C
Sbjct:  169 YCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDC 309          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.196e-27
Identity = 63/141 (44.68%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YCT + Q+PCA G+ Y+G GPIQ++ N NY   GRAIG D LN+P+ VA D +ISFK+A+W+WM               R+  S  +Q      GFG     ING  ECG  + ++VQDR+  Y  YC   GV PG NL+C
Sbjct:  161 YCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 301          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 9.196e-27
Identity = 65/141 (46.10%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YCT + Q+PCA G+ Y+G GPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+ALW+WM               R+  SA ++      GFG     ING  ECG    ++VQDR+  Y  YC   GV PG NL+C
Sbjct:  174 YCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDC 314          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.049e-26
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC+ TPQ+PCA G+ YYG GPIQ++ N NY   GRAIG D LN P+ VA D VISFK+ALW+WM               R+  S+ +       G+G     ING  ECG    ++VQDR+  +  YC   GV  G NL+C
Sbjct:  169 YCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 309          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.049e-26
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC+ TPQ+PCA G+ YYG GPIQ++ N NY   GRAIG D LN P+ VA D VISFK+ALW+WM               R+  S+ +       G+G     ING  ECG    ++VQDR+  +  YC   GV  G NL+C
Sbjct:  168 YCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 308          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.676e-26
Identity = 62/141 (43.97%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC  + ++PCA+GK YYG GPIQ++ N NY   GRAIG D LN+P+ VA D VISFKTALW+WM         H  +                 G+G     ING  ECG    ++VQDR+  Y  YC  FG+  G NL+C
Sbjct:  161 YCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDC 301          
BLAST of CX298435 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.564e-26
Identity = 61/141 (43.26%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    1 YCTQTPQYPCANGKFYYGLGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 360
            YC Q+ Q+PCA G+ YYG GPIQ++ N NY   GRAIG + LN+P+ VA + V+SFK+A+W+WM               R+  SA ++      G+G     ING  ECG  + A+VQDR+  Y  YC   GV PG N++C
Sbjct:  179 YCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDC 319          
The following BLAST results are available for this feature:
BLAST of CX298435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_SOLTU3.161e-2745.39Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU5.391e-2745.39Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC7.041e-2745.39Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_TOBAC9.196e-2745.39Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_SOLTU9.196e-2744.68Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_TOBAC9.196e-2746.10Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_PHAVU2.049e-2644.68Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU2.049e-2644.68Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_PEA2.676e-2643.97Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI3_TOBAC4.564e-2643.26Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06012B09SK RindPdig24 Citrus clementina cDNA clone C06012B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298435 ID=CX298435; Name=CX298435; organism=Citrus clementina; type=EST; length=558bp
TATTGTACACAGACTCCTCAATATCCATGTGCCAATGGTAAATTCTACTA
TGGCCTGGGACCGATTCAGCTCACCGGAAACGGAAACTACATAGATGCCG
GAAGGGCCATCGGTTTCGACGGTCTGAACTCTCCGGAAACGGTGGCCAGG
GACCGTGTCATATCTTTCAAGACTGCTTTGTGGTATTGGATGAGATACGT
GCACTCAGCACTAAACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATG
GTCCTGCTGAATGCGGCGGCCAAAACCGTGCACAAGTTCAGGATCGCGTT
AGGCGTTACACTGATTATTGCAAAAGATTTGGTGTTGATCCTGGACCAAA
TCTCGAGTGCTGATTAGATATTTGGTATGAAAATGTTACACTATGTGTAT
TATATTATATCACAGTAAGCCAGAGTTATTCCAAACAACTTTCTTTGTTT
GGTAACTCTGATGGAATAATTTTTGTGTACCTGATCATAAAATAAAGAGA
AAATTAATGGATGATTTGCAGTAATGAGTTTGCTAAAAAAAAAAAAAAAA
AAAAAAAA
back to top