CX298464

Overview
NameCX298464
Unique NameCX298464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC2_XENTR (Cytochrome c, testis-specific OS=Xenopus tropicalis GN=cyct PE=3 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.222e-29
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            + CHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W+E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLKQST+
Sbjct:   16 SQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGIVWDEGTLLEYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKQSTS 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_VARVA (Cytochrome c OS=Varanus varius PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.596e-29
Identity = 57/89 (64.04%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            + CHTVEKG  HK GPNL+ LFGR++G   G+SY+AANKN  + W E TL++YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++TA
Sbjct:   16 SQCHTVEKGGKHKTGPNLHQLFGRKTGEAEGFSYTAANKNKGITWGEDTLFEYLENPKKYIPGTKMIFAGIKKKTERDDLIAYLKEATA 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_STRCA (Cytochrome c OS=Struthio camelus GN=CYC PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.596e-29
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            + CHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:   16 SQCHTVEKGGKHKTGPNLDGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_SAMCY (Cytochrome c OS=Samia cynthia PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.596e-29
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHTVE G  HK GPNL+G +GR++G  PG+SYS ANK   + W + TL++YL NPKKYIPGTKMVF GLKK  +RADLIAYLK+ST
Sbjct:   20 AQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSNANKAKGITWGDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKEST 107          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC2_RAT (Cytochrome c, testis-specific OS=Rattus norvegicus GN=Cyct PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.084e-29
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTVEKG  HK GPNL GLFGR++G  PG+SY+ ANKN  V W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLI YLK++T+
Sbjct:   16 AQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWTEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIQYLKEATS 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_CROVV (Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.722e-29
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            CHTVE+G  HK GPNL+GLFGR++G   GYSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:   18 CHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_CROAT (Cytochrome c OS=Crotalus atrox PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.722e-29
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            CHTVE+G  HK GPNL+GLFGR++G   GYSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:   18 CHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_CROAD (Cytochrome c OS=Crotalus adamanteus PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.722e-29
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            CHTVE+G  HK GPNL+GLFGR++G   GYSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:   18 CHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_APTPA (Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.722e-29
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            + CHTVEKG  HK GPNL+G+FGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:   16 SQCHTVEKGGKHKTGPNLHGIFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC1_XENTR (Cytochrome c, somatic OS=Xenopus tropicalis GN=cycs PE=3 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 2.722e-29
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTVEK   HK GPNL GLFGR++G  PG+SY+ ANK+  + W E TL++YL NPKKYIPGTKM+F G+KK  +RADLIAYLK+ST+
Sbjct:   16 AQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERADLIAYLKKSTS 104          
The following BLAST results are available for this feature:
BLAST of CX298464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC2_XENTR1.222e-2965.17Cytochrome c, testis-specific OS=Xenopus tropicali... [more]
CYC_VARVA1.596e-2964.04Cytochrome c OS=Varanus varius PE=1 SV=2[more]
CYC_STRCA1.596e-2964.04Cytochrome c OS=Struthio camelus GN=CYC PE=1 SV=2[more]
CYC_SAMCY1.596e-2965.91Cytochrome c OS=Samia cynthia PE=1 SV=2[more]
CYC2_RAT2.084e-2965.17Cytochrome c, testis-specific OS=Rattus norvegicus... [more]
CYC_CROVV2.722e-2966.67Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2[more]
CYC_CROAT2.722e-2966.67Cytochrome c OS=Crotalus atrox PE=1 SV=2[more]
CYC_CROAD2.722e-2966.67Cytochrome c OS=Crotalus adamanteus PE=1 SV=2[more]
CYC_APTPA2.722e-2962.92Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=... [more]
CYC1_XENTR2.722e-2965.17Cytochrome c, somatic OS=Xenopus tropicalis GN=cyc... [more]

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Properties
Property NameValue
Genbank descriptionC06012E02SK RindPdig24 Citrus clementina cDNA clone C06012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298464 ID=CX298464; Name=CX298464; organism=Citrus clementina; type=EST; length=511bp
GAGGGCTCACTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTC
CTAATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTAC
TCATACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGAC
TTTGTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGA
TGGTATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCA
TATTTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTA
TTCCATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTG
TTTTTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTA
ACTTGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGA
TATTCAATTGAATTTCCTGGTTATAATCATATTTCATGAAAAAAAAAAAA
AAAAAAAAAAA
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