CX298499

Overview
NameCX298499
Unique NameCX298499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK5_POPTR (S-adenosylmethionine synthetase 5 OS=Populus trichocarpa GN=METK5 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 6.110e-57
Identity = 107/114 (93.86%), Postives = 113/114 (99.12%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYE 342
            TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKE+FDFRPGMI+INLDLKRGGNSRFLKTAAYGHFGR+DPDFTWEVVKPLK++
Sbjct:  277 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 6.110e-57
Identity = 107/114 (93.86%), Postives = 113/114 (99.12%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYE 342
            TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKE+FDFRPGMI+INLDLKRGGNSRFLKTAAYGHFGR+DPDFTWEVVKPLK++
Sbjct:  277 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK_POPDE (S-adenosylmethionine synthetase OS=Populus deltoides GN=METK PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.979e-57
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYE 342
            TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKE FDFRPGMI+INLDLKRGGNSRFLKTAAYGHFGR+DPDFTWEVVKPLK++
Sbjct:  277 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKERFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK2_PETCR (S-adenosylmethionine synthetase 2 (Fragment) OS=Petroselinum crispum GN=SMS-2 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.979e-57
Identity = 107/115 (93.04%), Postives = 112/115 (97.39%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 345
            TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPD+EIL+IVKE FDFRPGMI+INLDLKRGGN RFLKTAAYGHFGREDPDFTWEVVKPLK+EK
Sbjct:   30 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILQIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 144          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK3_PETHY (S-adenosylmethionine synthetase 3 OS=Petunia hybrida GN=SAM3 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.361e-56
Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 354
            TKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGVPEPLSVFVDTY TG IPDKEIL+IVKENFDFRPGMIAINLDLKRGGN RFLKTAAYGHFGR+D DFTWEVVKPLK EK Q+
Sbjct:  276 TKVDRSGAYIVRQAAKSVVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGMIPDKEILKIVKENFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDTDFTWEVVKPLKCEKAQD 393          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.361e-56
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 351
            TKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVP+PLSVFVD+Y TG IPDKEIL+IVKE FDFRPGMIAINLDLKRGGN+RFLKTAAYGHFGR+D DFTWEVVKPLK+EKPQ
Sbjct:  276 TKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPDPLSVFVDSYGTGNIPDKEILKIVKETFDFRPGMIAINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 392          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.778e-56
Identity = 106/115 (92.17%), Postives = 112/115 (97.39%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 345
            TKVDRSGAYIVRQAAKSIVA+GLARRC+VQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKE FDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGR+D DFTWEVVKPLK++K
Sbjct:  276 TKVDRSGAYIVRQAAKSIVANGLARRCVVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDTDFTWEVVKPLKWDK 390          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK_DENCR (S-adenosylmethionine synthetase OS=Dendrobium crumenatum GN=SAMS PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.322e-56
Identity = 106/116 (91.38%), Postives = 113/116 (97.41%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 348
            TKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKENFDFRPGMI INLDLKRGGN RF+KTAAYGHFGR+DPDFTWEVVKPLK++KP
Sbjct:  279 TKVDRSGAYIVRQAAKSVVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMITINLDLKRGGN-RFIKTAAYGHFGRDDPDFTWEVVKPLKWDKP 393          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.172e-56
Identity = 105/116 (90.52%), Postives = 110/116 (94.83%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 348
            TKVDRSGAYI RQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVDTY TGKIPD+EILRIV ENFDFRPGMI INLDL RGGN R+LKTAAYGHFGREDPDFTWEVVKPLK+E+P
Sbjct:  279 TKVDRSGAYIARQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNGRYLKTAAYGHFGREDPDFTWEVVKPLKWEEP 394          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK2_ORYSJ (S-adenosylmethionine synthetase 2 OS=Oryza sativa subsp. japonica GN=SAM2 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.172e-56
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 345
            TKVDRSGAYI RQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPDKEIL+IVKENFDFRPGM+ INLDLKRGGN RF+KTAAYGHFGREDPDFTWEVVKPLKYEK
Sbjct:  278 TKVDRSGAYIARQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGN-RFIKTAAYGHFGREDPDFTWEVVKPLKYEK 391          
The following BLAST results are available for this feature:
BLAST of CX298499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK5_POPTR6.110e-5793.86S-adenosylmethionine synthetase 5 OS=Populus trich... [more]
METK3_POPTR6.110e-5793.86S-adenosylmethionine synthetase 3 OS=Populus trich... [more]
METK_POPDE7.979e-5793.86S-adenosylmethionine synthetase OS=Populus deltoid... [more]
METK2_PETCR7.979e-5793.04S-adenosylmethionine synthetase 2 (Fragment) OS=Pe... [more]
METK3_PETHY1.361e-5690.68S-adenosylmethionine synthetase 3 OS=Petunia hybri... [more]
METK2_DAUCA1.361e-5690.60S-adenosylmethionine synthetase 2 OS=Daucus carota... [more]
METK_GOSHI1.778e-5692.17S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]
METK_DENCR2.322e-5691.38S-adenosylmethionine synthetase OS=Dendrobium crum... [more]
METK3_ORYSJ5.172e-5690.52S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK2_ORYSJ5.172e-5693.04S-adenosylmethionine synthetase 2 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC06012H03SK RindPdig24 Citrus clementina cDNA clone C06012H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298499 ID=CX298499; Name=CX298499; organism=Citrus clementina; type=EST; length=488bp
ACCAAGGTTGATAGAAGTGGTGCTTACATTGTGAGGCAGGCAGCAAAGAG
CATCGTTGCCAGTGGCCTTGCTCGCCGCTGCATTGTGCAGGTTTCTTATG
CTATTGGTGTCCCAGAGCCCCTTTCAGTGTTTGTTGACACTTATCGAACT
GGAAAGATTCCGGACAAGGAGATCCTGAGGATTGTGAAGGAGAACTTTGA
TTTCAGGCCTGGAATGATTGCCATTAACTTGGATCTCAAGAGGGGAGGAA
ATAGCAGGTTTTTGAAGACTGCTGCATATGGGCATTTTGGAAGGGAGGAT
CCTGACTTCACATGGGAGGTGGTGAAGCCCCTCAAGTATGAGAAACCCCA
AGAGTAGAATTTAAGTATGCAGTTTCATTCTTTGTTTGAACTCAATAATT
TACTTGTTCTTTCGTCTGCCTGTCAGATTCTGTCTTTTTTCTCTCTTGGT
CTTGGCCTTTTTTTTTAAAATAAATTTGTATTATCTTT
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