CX298499

Overview
NameCX298499
Unique NameCX298499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 6.990e-53
Identity = 99/112 (88.39%), Postives = 107/112 (95.54%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 336
            TKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGVPEPLSVFVDTY+TG IPDK+IL ++KE FDFRPGM+AINLDLKRGGN RF KTAAYGHFGR+DPDFTWEVVKPLK
Sbjct:  276 TKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVVKPLK 387          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 6.990e-53
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 345
            TKVDR GAYIVRQAAKSIVASGLARR IVQ+  AIGVPEPLSVFVDTY TGKIPD+EIL+IVKE FDFRPGMI+INLDL RGGN RFLKTAAYGHFGREDPDFTWEVVKPLK+EK
Sbjct:  251 TKVDRRGAYIVRQAAKSIVASGLARRAIVQLLRAIGVPEPLSVFVDTYGTGKIPDREILKIVKETFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 365          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 9.130e-53
Identity = 98/112 (87.50%), Postives = 107/112 (95.54%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 336
            TKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGVPEPLSVFVDTY+TG IPDK+IL ++KE FDFRPGM+AINLDLKRGGN RF KTAAYGHFGR+DPDFTWEV+KPLK
Sbjct:  276 TKVDRSGAYIVRQAAKSVVATGLARRCIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVIKPLK 387          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.192e-52
Identity = 102/116 (87.93%), Postives = 108/116 (93.10%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 348
            TKVDRSGAY+ RQAAKSIVAS LARRCIVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKENFDFRPG+I INL LKRGG  R+LKTAAYGHFGR+DPDFTWEVVKPL+ EKP
Sbjct:  277 TKVDRSGAYVARQAAKSIVASELARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGLITINLGLKRGG-YRYLKTAAYGHFGRDDPDFTWEVVKPLELEKP 391          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.557e-52
Identity = 98/115 (85.22%), Postives = 110/115 (95.65%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 345
            TKVDRSGAYI RQAAKSI+ASGLARRCIVQ+SYAIGVPEPLSVFVD+Y TGKIPD+EIL++VKENFDFRPGMI+INLDLK+GG  RF+KTAAYGHFGR+D DFTWEVVKPLK++K
Sbjct:  278 TKVDRSGAYIARQAAKSIIASGLARRCIVQISYAIGVPEPLSVFVDSYGTGKIPDREILKLVKENFDFRPGMISINLDLKKGG-KRFIKTAAYGHFGRDDADFTWEVVKPLKFDK 391          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.656e-52
Identity = 102/118 (86.44%), Postives = 109/118 (92.37%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 354
            TKVDRSGAYI RQAAKSIVA+GLARRCIVQ+SYAIGV EPLSVFVDTY TGKI DK+IL+IVKE FDFRPGMIA NLDL RGGN R+LKTAAYGHFGR+D DFTWEVVKPLK+EKPQE
Sbjct:  276 TKVDRSGAYIARQAAKSIVAAGLARRCIVQISYAIGVAEPLSVFVDTYGTGKISDKDILKIVKETFDFRPGMIANNLDLLRGGN-RYLKTAAYGHFGRDDADFTWEVVKPLKWEKPQE 392          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 5.918e-52
Identity = 100/117 (85.47%), Postives = 108/117 (92.31%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTG--KIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 345
            TKVDRSGAYIVRQAAKS+VA+GLARRC+VQVSYAIGVPEPLSVFVDTY TG  KI D EIL+++KENFDFRPGMI+INLDLKRGGN RF KTAAYGHFGREDPDFTWE VK LK+EK
Sbjct:  276 TKVDRSGAYIVRQAAKSVVAAGLARRCLVQVSYAIGVPEPLSVFVDTYGTGTGKIQDAEILKLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK2_PINCO (S-adenosylmethionine synthetase 2 OS=Pinus contorta GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 7.729e-52
Identity = 98/117 (83.76%), Postives = 106/117 (90.60%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 351
            TKVDRSGAYIVRQAAKSIVA+GLARRC+VQVSYAIGV   LS+FVD+Y TG IPDKEIL I+KE+FDFRPGMI INLDLKRGGN RF KTAAYGHFGR+DPDFTWE VKPLK+EK Q
Sbjct:  276 TKVDRSGAYIVRQAAKSIVAAGLARRCLVQVSYAIGVRGALSIFVDSYGTGSIPDKEILEIIKEHFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWEKAQ 392          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK2_ACTCH (S-adenosylmethionine synthetase 2 OS=Actinidia chinensis GN=SAM2 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.009e-51
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 336
            TKVDRSGAY+VRQAAKS+VASGLARRCIVQVSYAIGVPEPLSVFVDTY+TGKIPDK+IL ++KENFDFRPGMIAINLDLKRGGN R+ KTAAYGHFGR+D D TWE VK LK
Sbjct:  276 TKVDRSGAYVVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAAYGHFGRDDADLTWETVKILK 387          
BLAST of CX298499 vs. ExPASy Swiss-Prot
Match: METK1_ACTCH (S-adenosylmethionine synthetase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.249e-51
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 336
            TKVDRSGAYIVRQAAKS+VASGLARRC+VQVSYAIGV EPLSVFVDTY+TGKI DK+IL ++KENFDFRPGMIAINLDLKRGGN R+ KTAAYGHFGR+DPDFTWE VK LK
Sbjct:  276 TKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVAEPLSVFVDTYKTGKIADKDILALIKENFDFRPGMIAINLDLKRGGNLRYQKTAAYGHFGRDDPDFTWETVKILK 387          
The following BLAST results are available for this feature:
BLAST of CX298499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK3_ARATH6.990e-5388.39S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK1_PEA6.990e-5388.70S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK4_BRAJU9.130e-5387.50S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK_MUSAC1.192e-5287.93S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK2_HORVU1.557e-5285.22S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK_MESCR2.656e-5286.44S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]
METK1_PICSI5.918e-5285.47S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK2_PINCO7.729e-5283.76S-adenosylmethionine synthetase 2 OS=Pinus contort... [more]
METK2_ACTCH1.009e-5186.61S-adenosylmethionine synthetase 2 OS=Actinidia chi... [more]
METK1_ACTCH2.249e-5186.61S-adenosylmethionine synthetase 1 OS=Actinidia chi... [more]

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Properties
Property NameValue
Genbank descriptionC06012H03SK RindPdig24 Citrus clementina cDNA clone C06012H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298499 ID=CX298499; Name=CX298499; organism=Citrus clementina; type=EST; length=488bp
ACCAAGGTTGATAGAAGTGGTGCTTACATTGTGAGGCAGGCAGCAAAGAG
CATCGTTGCCAGTGGCCTTGCTCGCCGCTGCATTGTGCAGGTTTCTTATG
CTATTGGTGTCCCAGAGCCCCTTTCAGTGTTTGTTGACACTTATCGAACT
GGAAAGATTCCGGACAAGGAGATCCTGAGGATTGTGAAGGAGAACTTTGA
TTTCAGGCCTGGAATGATTGCCATTAACTTGGATCTCAAGAGGGGAGGAA
ATAGCAGGTTTTTGAAGACTGCTGCATATGGGCATTTTGGAAGGGAGGAT
CCTGACTTCACATGGGAGGTGGTGAAGCCCCTCAAGTATGAGAAACCCCA
AGAGTAGAATTTAAGTATGCAGTTTCATTCTTTGTTTGAACTCAATAATT
TACTTGTTCTTTCGTCTGCCTGTCAGATTCTGTCTTTTTTCTCTCTTGGT
CTTGGCCTTTTTTTTTAAAATAAATTTGTATTATCTTT
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