CX298505

Overview
NameCX298505
Unique NameCX298505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C39_ORYSJ (Probable protein phosphatase 2C 39 OS=Oryza sativa subsp. japonica GN=Os04g0403701 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 43/135 (31.85%), Postives = 77/135 (57.04%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIV----QNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFL 397
            +G ++V+R+ G  YLK+ + N + L    R+R     P + + P   +H++   D F++  SDGL++  SN + V +V     ++P    A+ L++  L +AAK+  +   +L +I  G RR +HDD+T+IV+ L
Sbjct:  374 KGKLKVTRAFGVGYLKQKKLN-DALMGILRVRNLCSPPYVYTNPHTVSHKVTEDDLFVVLGSDGLFDFFSNDEVVQLVYQFMHDNPIGDPAKYLIEQLLLKAAKEAALTAEELMRIPVGSRRKYHDDVTIIVIIL 507          
BLAST of CX298505 vs. ExPASy Swiss-Prot
Match: P2C46_ORYSJ (Putative protein phosphatase 2C 46 OS=Oryza sativa subsp. japonica GN=Os05g0111800 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 43/139 (30.94%), Postives = 78/139 (56.12%), Query Frame = 2
Query:    5 EGLIQVSRSIGDVYLKKAEYNREPLYAKFRLREPFRKPILSSEPSISAHELQPFDQFLIFASDGLWEHLSNQDAVDIVQ----NHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHL 409
            +G ++V+R+ G  YLK+  +N+  L   F++      P +S  P I  H L   D+FLI +SDGL+++ + ++ V  V+     +P    A+ L    L  AA +  M + +L +I +G RR +HDD+++I++ L+  +
Sbjct:  451 KGCLKVTRAFGAGYLKEPRWNKA-LLEVFQVDYVGSSPYISCRPYIRHHRLGAQDKFLILSSDGLYDYFTKEEVVAQVEAFTAGYPDEDPAKYLSHQILLRAANQAGMGFHELLEIQQGDRRQYHDDVSIIIISLEGKI 588          
The following BLAST results are available for this feature:
BLAST of CX298505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
P2C39_ORYSJ8.298e-1431.85Probable protein phosphatase 2C 39 OS=Oryza sativa... [more]
P2C46_ORYSJ1.415e-1330.94Putative protein phosphatase 2C 46 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC06012H09SK RindPdig24 Citrus clementina cDNA clone C06012H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298505 ID=CX298505; Name=CX298505; organism=Citrus clementina; type=EST; length=707bp
GAGGGAAGGCTTGATACAGGTTTCTAGATCTATTGGCGATGTGTATCTGA
AAAAAGCCGAGTATAACAGGGAGCCTTTGTATGCGAAATTTCGCCTTCGT
GAACCTTTTAGAAAACCAATTCTGAGTTCTGAACCATCAATTTCGGCGCA
TGAACTTCAACCTTTTGATCAGTTTCTTATATTTGCTTCTGATGGACTGT
GGGAGCATCTTAGCAATCAAGATGCGGTTGATATAGTCCAAAATCACCCA
CGCAGTGGAAGTGCTAGGAGGCTTGTGAAAGCTGCATTGCAGGAAGCTGC
GAAAAAGAGAGAAATGAGATACTCGGATTTGAAGAAGATTGATCGGGGCG
TTCGCCGGCACTTCCACGATGACATTACGGTCATTGTTGTATTTCTTGAT
TCACATCTTGTGAGCAGAGCCAGCTCAGTCAGAGGCCCGTCTTTGTCTGT
GAGAGGGGGTGGTGTTAACATGCCTTCAAAAACTTTAGCTCCATGCGCCA
CGCCCGTTGAACTTAGCACCACTTAAAAGGGGCTGGTTCTTCATGCAATT
GTAGTTGGTGCTGAAAACATTTTGGAACTTCTACAAAATATCAACTGGTA
TATGCAGGTGATGCAGAAGGTGCAGCCTTTTATTAATTTTTTAATGTACA
AATGTACACTTTTAACTTAAAAGACTTGTATTTTATTTAATTTCTGAGTA
CTTTGAG
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