CX298668

Overview
NameCX298668
Unique NameCX298668
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.190e-41
Identity = 85/174 (48.85%), Postives = 112/174 (64.37%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVK-EDDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGFLRHNI 575
            + MA  + I M  +L  YK GF+G+ S+VDVGGGTG  L  IV  YP IKG+NFDLPHV+  AP Y GV HVGGDM  +VP  DA+FMKWI HDW DE C++ LKNC  A+P+  GK++L E ++    D+ +        D+ M AH   GKERTE+E++ + +  GF   N+
Sbjct:  178 RGMADHSTITMKKILETYK-GFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPD-NGKVILGECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNV 349          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_ROSCH (Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40
Identity = 84/169 (49.70%), Postives = 109/169 (64.50%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVK-EDDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            K MA  + I M  +L  YK GF+G+ S+VDVGGGTG  +  IV  YP IKG+NFDLPHV+  AP Y GV HVGGDM  +VP  DA+FMKWI HDW DE C++ LKNC  A+P+  GK++L E ++    D  +        D+ M AH   GKERTE+E++ + +  GF
Sbjct:  178 KGMADHSTITMKKILETYK-GFEGLTSIVDVGGGTGAVVNMIVSKYPSIKGINFDLPHVIEDAPQYPGVQHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPD-NGKVILGECILPVAPDTSLATKGVVHIDVVMLAHNPGGKERTEQEFEALAKGSGF 344          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_COFCA (Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.933e-40
Identity = 81/169 (47.93%), Postives = 112/169 (66.27%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            + M+  + I M  +L  Y+ GF+G++++VDVGGGTG  L  I+  YP IKG+NF+LPHVV  AP + GV HVGGDM  +VP  DA+FMKWI HDW D+ C ++LKNC +A+P+  GK++L E V+ E  D  +        D+ M AH   GKERTEKE++ + +  GF
Sbjct:  165 QGMSNHSTITMKKILEVYR-GFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPD-NGKVILAECVLPEAPDTSLATQNVVHVDVVMLAHNPGGKERTEKEFEALAKGAGF 331          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_CAPAN (Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.933e-40
Identity = 82/169 (48.52%), Postives = 109/169 (64.50%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            + M+  + + M  +L  YK GF+G+ S+VDVGGGTG  +  IV  YP IKG+NFDL HV+  AP Y GV HVG DM  +VP ADA+FMKWI HDW DE C++ LKNC +A+P   GK+++ E ++ E  D       A   D+ M AH   GKERTEKE++ + +  GF
Sbjct:  174 RGMSDHSTMTMKKILEDYK-GFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLSHVIEDAPAYPGVEHVGRDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALP-ANGKVLVAECILPETPDTSAATKNAVHVDIVMLAHNPGGKERTEKEFEALAKGAGF 340          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: 4OMT_COPJA (3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.017e-39
Identity = 76/203 (37.44%), Postives = 125/203 (61.58%), Query Frame = 3
Query:    9 MWDFAXXXXXXXXXXXKAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKEDDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGFLRHNIINLPAVPAIIEAYP 617
            +W++            + MA   +++ S+L+S  +D F GI SLVDVGGG G  +  I + +PHIK   FDLPHV+A +     +  +GGDM  +VP+A A+ +K ILHDW+DE  ++ILK CR A+P+  GK+++V++ + E+ +     T  + D+ M  +T  GKERT++ W++I++  GF    I ++ A+ ++IE +P
Sbjct:  149 IWEYLEGHPDQSQLFNEGMAGETRLLTSSLISGSRDMFQGIDSLVDVGGGNGTTVKAISDAFPHIKCTLFDLPHVIANSYDLPNIERIGGDMFKSVPSAQAIILKLILHDWNDEDSIKILKQCRNAVPKDGGKVIIVDVALDEESDHELSSTRLILDIDMLVNTG-GKERTKEVWEKIVKSAGFSGCKIRHIAAIQSVIEVFP 350          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_CAPCH (Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.441e-39
Identity = 80/161 (49.69%), Postives = 106/161 (65.84%), Query Frame = 3
Query:   87 MSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGFLR 566
            M  +L  Y  GF+G+ S+VDVGGGTG  +  IV  YP IKG+NFDLPHV+  AP Y GV  VGGDM  +VP ADA+FMKWI HDW D+ C+++LKNC +A+P   GK+++VE ++ E  D      +    D+ M AH   GKERTEK+++ +   G F R
Sbjct:  184 MKKILEDYT-GFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLPHVIRDAPSYPGVEQVGGDMFVSVPKADAIFMKWICHDWSDDHCIKLLKNCYEALP-ANGKVIIVECILPEAPDTSAATKSKVHGDIIMLAHNPGGKERTEKDFEALANWGWFSR 342          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_ZINEL (Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.665e-39
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 3
Query:  114 DGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGFLRHN 572
            +GF G+++LVDVGGGTG  L  I   +  +KG+NFDLPHV+A A  Y+G+ HVGGDM  +VP  DA+FMKWILHDW D  C+++LKNC K++PE  GK+++ E ++ E  D           D+ M AH   GKERTEKE++ + +  GF   N
Sbjct:  187 NGFSGLKTLVDVGGGTGASLNMITSKHKSLKGINFDLPHVIADATTYQGIEHVGGDMFESVPKGDAIFMKWILHDWSDAHCLQVLKNCYKSLPE-NGKVIVAECILPEAPDTTPATQNVIHIDVIMLAHNPGGKERTEKEFEALAKGAGFKGFN 339          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: COMT1_CLABR (Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.308e-38
Identity = 80/169 (47.34%), Postives = 106/169 (62.72%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVK-EDDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            + M+  + I M  +   Y  GF+ + ++VDVGGGTG  L+ IV  YP IKG+NFDLPHV+  AP+Y GV HVGGDM  +VP  DA+FMKWI HDW DE C++ LKNC  A+PE  GK+++ E ++    D  +        D  M AH   GKERTEKE++ +    GF
Sbjct:  183 RGMSDHSTITMKKIFEMYT-GFEALNTIVDVGGGTGAVLSMIVAKYPSIKGINFDLPHVIEDAPIYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPEH-GKVIVAECILPLSPDPSLATKGVIHIDAIMLAHNPGGKERTEKEFEALAIGAGF 349          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: OMT2_CHRAE (Quercetin 3-O-methyltransferase 2 OS=Chrysosplenium americanum GN=OMT2 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 79/169 (46.75%), Postives = 107/169 (63.31%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            + M+  + I M  +   Y+ GF G+ SLVDVGGGTG  L  I+  YP I+ +NFDLPHV+  AP Y G+ HVGGDM  +VP  DA+FMKWI HDW DE C+++LKNC  A+P   GK++L E ++ E  D+ +        D+   AH   GKERTEKE++ + +  GF
Sbjct:  154 RGMSDHSTITMKKVFQTYQ-GFQGLTSLVDVGGGTGATLTMILSKYPTIRCINFDLPHVIEDAPEYPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALP-NNGKVILAECILPEVPDSSLATKGVVHIDVITVAHNPGGKERTEKEFEALAKAAGF 320          
BLAST of CX298668 vs. ExPASy Swiss-Prot
Match: OMT1_CHRAE (Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 79/169 (46.75%), Postives = 107/169 (63.31%), Query Frame = 3
Query:   57 KAMACTAKIVMSTLLSHYKDGFDGIRSLVDVGGGTGEELAEIVEFYPHIKGVNFDLPHVVATAPVYEGVSHVGGDMLNAVPNADAVFMKWILHDWDDEACVRILKNCRKAIPEKTGKLVLVEIVVKE-DDNDVFGDTAYLFDLCMFAHTRCGKERTEKEWKQILEEGGF 560
            + M+  + I M  +   Y+ GF G+ SLVDVGGGTG  L  I+  YP I+ +NFDLPHV+  AP Y G+ HVGGDM  +VP  DA+FMKWI HDW DE C+++LKNC  A+P   GK++L E ++ E  D+ +        D+   AH   GKERTEKE++ + +  GF
Sbjct:  154 RGMSDHSTITMKKVFQAYQ-GFQGLTSLVDVGGGTGATLTMILSKYPTIRCINFDLPHVIEDAPEYPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALP-NNGKVILAECILPEVPDSSLATKGVVHIDVITVAHNPGGKERTEKEFEALAKAAGF 320          
The following BLAST results are available for this feature:
BLAST of CX298668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
COMT1_PRUDU8.190e-4148.85Caffeic acid 3-O-methyltransferase OS=Prunus dulci... [more]
COMT1_ROSCH2.383e-4049.70Caffeic acid 3-O-methyltransferase OS=Rosa chinens... [more]
COMT1_COFCA6.933e-4047.93Caffeic acid 3-O-methyltransferase OS=Coffea canep... [more]
COMT1_CAPAN6.933e-4048.52Caffeic acid 3-O-methyltransferase OS=Capsicum ann... [more]
4OMT_COPJA2.017e-3937.443'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltran... [more]
COMT1_CAPCH3.441e-3949.69Caffeic acid 3-O-methyltransferase OS=Capsicum chi... [more]
COMT1_ZINEL7.665e-3948.70Caffeic acid 3-O-methyltransferase OS=Zinnia elega... [more]
COMT1_CLABR1.308e-3847.34Caffeic acid 3-O-methyltransferase OS=Clarkia brew... [more]
OMT2_CHRAE2.913e-3846.75Quercetin 3-O-methyltransferase 2 OS=Chrysospleniu... [more]
OMT1_CHRAE2.913e-3846.75Quercetin 3-O-methyltransferase 1 OS=Chrysospleniu... [more]

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Properties
Property NameValue
Genbank descriptionC06014C04SK RindPdig24 Citrus clementina cDNA clone C06014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298668 ID=CX298668; Name=CX298668; organism=Citrus clementina; type=EST; length=724bp
GCTGTGAAATGTGGGATTTCGCTTCACAAAACTCTCAATTCAACAACTCG
TTCAATAAGGCCATGGCATGCACGGCAAAGATTGTGATGAGCACACTCCT
CTCACACTATAAAGACGGGTTTGATGGCATACGATCACTGGTCGACGTGG
GTGGTGGCACTGGCGAAGAGCTTGCCGAGATTGTCGAATTCTATCCACAC
ATCAAAGGTGTAAACTTTGATTTGCCACATGTTGTTGCCACAGCACCTGT
GTATGAAGGAGTCTCGCACGTCGGAGGTGACATGCTTAACGCGGTTCCTA
ATGCTGATGCAGTTTTTATGAAGTGGATATTGCATGATTGGGATGACGAA
GCCTGTGTCAGGATTCTGAAAAACTGCCGAAAAGCAATTCCGGAGAAAAC
TGGAAAGCTTGTGTTAGTCGAAATCGTTGTAAAAGAAGATGATAACGACG
TATTTGGCGACACGGCCTACTTATTTGATCTATGTATGTTTGCTCACACA
AGGTGTGGGAAGGAAAGGACTGAAAAAGAATGGAAGCAAATATTGGAAGA
AGGAGGATTCCTCCGCCATAACATCATCAACCTACCGGCTGTACCTGCCA
TTATTGAGGCCTATCCGCAGTGACATTAATTTGAAGCTCAAATAAAATTA
CAAGTTTCACTCCCACCGAATACCAACTCTTCCCCTCCCCCCCCAAAAAA
AGCATAAAGTGCATTTACGGCTAG
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