CX298699

Overview
NameCX298699
Unique NameCX298699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            LEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   15 LEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            LEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   15 LEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.948e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            LEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   15 LEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.544e-27
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.544e-27
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            L+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   15 LDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            LEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   15 LEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.340e-27
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.340e-27
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX298699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_NEUCR1.492e-2796.77Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_ACECL1.492e-2795.16Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_ACACA1.948e-2796.77Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY2.544e-2795.16Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL2.544e-2795.16Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_TRYBB3.323e-2795.16Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EUPEU3.323e-2795.16Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_AGLNE3.323e-2795.16Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA4.340e-2795.16Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR4.340e-2795.16Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06014E12SK RindPdig24 Citrus clementina cDNA clone C06014E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298699 ID=CX298699; Name=CX298699; organism=Citrus clementina; type=EST; length=370bp
CTCTGGAGGTGGAGAGTTCTGATACAATTGATAATGTCAAGGCAAAGATT
CAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTCATTTTCGCTGG
GAAGCAGCTAGAGGACGGCCGTACCCTTGCTGATTATAACATCCAAAAGG
AGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGTGGTGAATGCTGAGAT
GGTTGTTAAGTTGTGCTTGTGTCTTTGTTTGGTCGGGTTATTGTTGGTTC
CGTCATGAATTAGTTTGTTGCTTTTGGGTTATGGTGCTCTGTTTCCGTCT
TTTGTTGAACAAGTTTTATGCAGTGGTGAATAAAAAATTGATTTAAATAA
AAAAAAAAAAAAAAAAAAAA
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