CX298699

Overview
NameCX298699
Unique NameCX298699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.674e-26
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            L+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   15 LDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.185e-26
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.069e-25
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 182
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    4 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.927e-21
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   15 VETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.012e-20
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 3
Query:    6 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   16 ETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.070e-17
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 191
            +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:   15 IDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGQ 77          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.185e-16
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   15 IDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   15 IDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   15 IDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 191
            +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG+
Sbjct:   15 IDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGD 77          
The following BLAST results are available for this feature:
BLAST of CX298699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_PHYIN3.674e-2691.94Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_LEITA8.185e-2691.94Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE1.069e-2595.00Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP7.927e-2175.81Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC3.012e-2073.77Ubiquitin-like protein OS=Autographa californica n... [more]
RUB2_ORYSJ9.070e-1760.32NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_DESAN1.185e-1662.90NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB1_ORYSJ1.547e-1661.29NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH1.547e-1661.29NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME2.639e-1655.56NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC06014E12SK RindPdig24 Citrus clementina cDNA clone C06014E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298699 ID=CX298699; Name=CX298699; organism=Citrus clementina; type=EST; length=370bp
CTCTGGAGGTGGAGAGTTCTGATACAATTGATAATGTCAAGGCAAAGATT
CAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTCATTTTCGCTGG
GAAGCAGCTAGAGGACGGCCGTACCCTTGCTGATTATAACATCCAAAAGG
AGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGTGGTGAATGCTGAGAT
GGTTGTTAAGTTGTGCTTGTGTCTTTGTTTGGTCGGGTTATTGTTGGTTC
CGTCATGAATTAGTTTGTTGCTTTTGGGTTATGGTGCTCTGTTTCCGTCT
TTTGTTGAACAAGTTTTATGCAGTGGTGAATAAAAAATTGATTTAAATAA
AAAAAAAAAAAAAAAAAAAA
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