CX298699

Overview
NameCX298699
Unique NameCX298699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   15 IDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:   15 LDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.500e-15
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   15 IDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.448e-14
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEC 194
            +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG C
Sbjct:   15 IEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.503e-14
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEC 194
            L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG C
Sbjct:   15 LDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGSC 78          
The following BLAST results are available for this feature:
BLAST of CX298699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RUB2_ARATH1.310e-1559.68NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_CAEEL1.310e-1558.06NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB3_ORYSJ6.500e-1554.84NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RUB3_ARATH1.448e-1453.13NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT1.891e-1453.23NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT1.891e-1453.23NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE1.891e-1453.23NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN1.891e-1453.23NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN1.891e-1453.23NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
UBL1_SCHPO5.503e-1448.44Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionC06014E12SK RindPdig24 Citrus clementina cDNA clone C06014E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298699 ID=CX298699; Name=CX298699; organism=Citrus clementina; type=EST; length=370bp
CTCTGGAGGTGGAGAGTTCTGATACAATTGATAATGTCAAGGCAAAGATT
CAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTCATTTTCGCTGG
GAAGCAGCTAGAGGACGGCCGTACCCTTGCTGATTATAACATCCAAAAGG
AGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGTGGTGAATGCTGAGAT
GGTTGTTAAGTTGTGCTTGTGTCTTTGTTTGGTCGGGTTATTGTTGGTTC
CGTCATGAATTAGTTTGTTGCTTTTGGGTTATGGTGCTCTGTTTCCGTCT
TTTGTTGAACAAGTTTTATGCAGTGGTGAATAAAAAATTGATTTAAATAA
AAAAAAAAAAAAAAAAAAAA
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