CX298699

Overview
NameCX298699
Unique NameCX298699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:   15 IDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76
[Close]
BLAST of CX298699 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 3 
Query:    3 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 188
            +E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:   15 VELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76
The following BLAST results are available for this feature:
BLAST of CX298699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
NEDD8_DICDI3.567e-1350.00NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
RUB1_YEAST1.499e-1150.00NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC06014E12SK RindPdig24 Citrus clementina cDNA clone C06014E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298699 ID=CX298699; Name=CX298699; organism=Citrus clementina; type=EST; length=370bp
CTCTGGAGGTGGAGAGTTCTGATACAATTGATAATGTCAAGGCAAAGATT
CAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTCATTTTCGCTGG
GAAGCAGCTAGAGGACGGCCGTACCCTTGCTGATTATAACATCCAAAAGG
AGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGTGGTGAATGCTGAGAT
GGTTGTTAAGTTGTGCTTGTGTCTTTGTTTGGTCGGGTTATTGTTGGTTC
CGTCATGAATTAGTTTGTTGCTTTTGGGTTATGGTGCTCTGTTTCCGTCT
TTTGTTGAACAAGTTTTATGCAGTGGTGAATAAAAAATTGATTTAAATAA
AAAAAAAAAAAAAAAAAAAA
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