CX299677

Overview
NameCX299677
Unique NameCX299677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_CLAM3 (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=metK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.511e-43
Identity = 95/174 (54.60%), Postives = 111/174 (63.79%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI--------GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+CDQISD+ILDA L QDP S+ A ET   T LV V GE+TT   V+  +IVRD  R+IG+ S +VG D  NC V V I  QSPDIAQGV      R            GAGDQG MFGYA+ +TP FMPL   LA +L  +L  VR +G   +LRPDGKTQVT+ Y
Sbjct:   12 VTEGHPDKICDQISDSILDALLTQDPTSRAAVETLVTTGLVHVAGEVTTSGYVDIPQIVRDRIRDIGYDSSEVGFDGSNCGVTVSIGAQSPDIAQGVDRSYESRSGSASTDAHDLQGAGDQGLMFGYASRDTPVFMPLPIYLAHRLAERLAAVRHSGELAYLRPDGKTQVTIGY 185          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_BURXL (S-adenosylmethionine synthetase OS=Burkholderia xenovorans (strain LB400) GN=metK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.511e-43
Identity = 91/166 (54.82%), Postives = 116/166 (69.88%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDAILDA L QD  S+VA ET   T LV++ GEITT ANV+Y ++ R+T + IG+ + D G+D   C VLV  ++QSPDIAQGV        ++ GAGDQG MFGYA +ETPE MPL   L+ +L  +   +R++G  PWLRPD K+QVTV Y
Sbjct:   12 VSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANVDYIQVARNTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQ-GAGDQGLMFGYACEETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRY 176          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_BURPP (S-adenosylmethionine synthetase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.511e-43
Identity = 91/166 (54.82%), Postives = 116/166 (69.88%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDAILDA L QD  S+VA ET   T LV++ GEITT ANV+Y ++ R+T + IG+ + D G+D   C VLV  ++QSPDIAQGV        ++ GAGDQG MFGYA +ETPE MPL   L+ +L  +   +R++G  PWLRPD K+QVTV Y
Sbjct:   12 VSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANVDYIQVARNTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQ-GAGDQGLMFGYACEETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRY 176          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_PROM2 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9215) GN=metK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.973e-43
Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDV-GLDADNCKVLVYIEQQSPDIAQGVH---GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+CDQISDA+LDA L +DP+S+VACET   T L ++ GEIT+KA V+Y K+VR+  + IG+      G DA++C VLV +++QSPDI+QGV+          +  GAGDQG MFGYA DETPE MPL   LA +L  +L +VR      +L PDGKTQV+++Y
Sbjct:   11 VTEGHPDKICDQISDAVLDALLTEDPESRVACETVVNTGLCLLTGEITSKAKVDYIKLVRNVIKEIGYEGYKAGGFDANSCAVLVALDEQSPDISQGVNEADDVNDDLEDNTGAGDQGIMFGYACDETPELMPLPISLAHRLAIQLAKVRHENLLNYLLPDGKTQVSIDY 180          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_DIAST (S-adenosylmethionine synthetase OS=Diaphorobacter sp. (strain TPSY) GN=metK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.973e-43
Identity = 91/166 (54.82%), Postives = 115/166 (69.28%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDAILDA   QDP S+VA ET T T LV++ GEITT A+V+Y ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV  H S      GAGDQG MFGYA DETPE MP     A +L  +  ++RK+G  P+LRPD K+QVT+ Y
Sbjct:   12 VSEGHPDKVADQISDAILDAIFTQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV-DHASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGRLPFLRPDAKSQVTMRY 176          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_DECAR (S-adenosylmethionine synthetase OS=Dechloromonas aromatica (strain RCB) GN=metK PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.973e-43
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+ DQISDAILDA L QD  S+VA ET   T LV++ GEITT ANV+Y ++ RDT + IG+ + + G+D   C VLV  ++QSPDIAQGV+        + GAGDQG MFGYA DETP  MPL   L+ ++  +   +RK+G  PW RPD K+QVT+ Y
Sbjct:   11 VGEGHPDKVADQISDAILDAILAQDKHSRVAAETLCNTGLVVLAGEITTNANVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGVNAAYDDNLGQ-GAGDQGLMFGYACDETPSLMPLPIYLSHRMVERQAMLRKDGRLPWARPDAKSQVTIRY 175          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_RALEH (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.577e-43
Identity = 92/166 (55.42%), Postives = 114/166 (68.67%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDA+LDA L QD  ++VA ET   T LV++ GEITT ANV+Y +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV    S      GAGDQG MFGYA DETPE MP     A +L  + + +R++G  PWLRPD K+QVTV Y
Sbjct:   12 VSEGHPDKVADQISDAVLDAILAQDKYARVAAETLCNTGLVVLAGEITTTANVDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV-DRASDDYLNQGAGDQGLMFGYACDETPELMPFPIYYAHRLVERQSLLRRDGRLPWLRPDAKSQVTVRY 176          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_PROM0 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9301) GN=metK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.577e-43
Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDV-GLDADNCKVLVYIEQQSPDIAQGVHGH---LSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+CDQISDA+LDA L +DP+S+VACET   T L ++ GEIT+KA V+Y K+VR+  + IG+      G DA++C VLV +++QSPDI+QGV+          +  GAGDQG MFGYA DETPE MPL   LA +L  +L +VR      +L PDGKTQV+++Y
Sbjct:   11 VTEGHPDKICDQISDAVLDALLTEDPESRVACETVVNTGLCLLTGEITSKAKVDYIKLVRNVIKEIGYEGYRAGGFDANSCAVLVALDEQSPDISQGVNDADDINDDLEDNTGAGDQGIMFGYACDETPELMPLPISLAHRLAIQLAKVRHEEVLNYLLPDGKTQVSIDY 180          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_DESVM (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.577e-43
Identity = 90/166 (54.22%), Postives = 111/166 (66.87%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+ DQISDA+LD  L QDP S+VACET   T +  + GEI TK   +  ++VR T RNIG+ S ++G D   C V+  I++QS DIAQGV       PE+ GAGDQG MFG+A DETP  MP     A QL  +LT+VRK+G   +LRPDGKTQV+ EY
Sbjct:   15 VTEGHPDKVADQISDAVLDVLLAQDPMSRVACETLVTTGMAFIAGEIRTKGFADLPEVVRSTIRNIGYNSSEMGFDWKTCAVISSIDKQSGDIAQGVD---RGNPEDQGAGDQGMMFGFACDETPTLMPAPIYWAHQLSQRLTQVRKDGILDFLRPDGKTQVSFEY 177          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_DELAS (S-adenosylmethionine synthetase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=metK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.577e-43
Identity = 92/166 (55.42%), Postives = 114/166 (68.67%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDAILDA   QDP S+VA ET T T LV++ GEITT ANV+Y ++ RDT + IG+ + D G+D   C VLV  ++QS DIAQGV    S      GAGDQG MFGYA DETPE MP     A +L  +  ++RK+G  P+LRPD K+QVT+ Y
Sbjct:   12 VSEGHPDKVADQISDAILDAIFAQDPYSRVAAETLTNTGLVVLAGEITTGANVDYIQVARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSQDIAQGV-DKASDDELNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGRLPFLRPDAKSQVTMRY 176          
The following BLAST results are available for this feature:
BLAST of CX299677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CLAM31.511e-4354.60S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_BURXL1.511e-4354.82S-adenosylmethionine synthetase OS=Burkholderia xe... [more]
METK_BURPP1.511e-4354.82S-adenosylmethionine synthetase OS=Burkholderia ph... [more]
METK_PROM21.973e-4352.94S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_DIAST1.973e-4354.82S-adenosylmethionine synthetase OS=Diaphorobacter ... [more]
METK_DECAR1.973e-4353.61S-adenosylmethionine synthetase OS=Dechloromonas a... [more]
METK_RALEH2.577e-4355.42S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_PROM02.577e-4352.94S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_DESVM2.577e-4354.22S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]
METK_DELAS2.577e-4355.42S-adenosylmethionine synthetase OS=Delftia acidovo... [more]

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Properties
Property NameValue
Genbank descriptionC07001A05SK NTLeaf1 Citrus clementina cDNA clone C07001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299677 ID=CX299677; Name=CX299677; organism=Citrus clementina; type=EST; length=516bp
CACGAGGGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTCCG
ATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGGCT
TGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATCAC
AACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCGCA
ACATTGGATTTGCCTCTGATGATGTGGGTTTGGATGCTGATAACTGTAAG
GTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTTCA
TGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATCAGGGGC
ATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGT
CATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAA
TGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTG
AGTATTACAATGAGAA
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