CX299677

Overview
NameCX299677
Unique NameCX299677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_ACISJ (S-adenosylmethionine synthetase OS=Acidovorax sp. (strain JS42) GN=metK PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.577e-43
Identity = 91/166 (54.82%), Postives = 115/166 (69.28%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDAILDA   QDP S+VA ET T T LV++ GEITT A+V+Y ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV  H S      GAGDQG MFGYA DETPE MP     A +L  +  ++RK+G  P+LRPD K+QVT+ Y
Sbjct:   12 VSEGHPDKVADQISDAILDAIFTQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIQRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV-DHASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGRLPFLRPDAKSQVTMRY 176          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_PROM9 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9312) GN=metK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43
Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDV-GLDADNCKVLVYIEQQSPDIAQGVH---GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+CDQISDA+LDA L +DP+S+VACET   T L ++ GEIT+KA V+Y K+VR+  + IG+      G DA++C VLV +++QSPDI+QGV+          +  GAGDQG MFGYA DETPE MPL   LA +L  +L +VR      +L PDGKTQV+++Y
Sbjct:   11 VTEGHPDKICDQISDAVLDALLTEDPESRVACETVVNTGLCLLTGEITSKAKVDYIKLVRNVIKEIGYEGYRAGGFDANSCAVLVALDEQSPDISQGVNYADDVNDDLEDNTGAGDQGIMFGYACDETPELMPLPISLAHRLAIQLAKVRHEEVLNYLLPDGKTQVSIDY 180          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_CORJK (S-adenosylmethionine synthetase OS=Corynebacterium jeikeium (strain K411) GN=metK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.366e-43
Identity = 95/178 (53.37%), Postives = 111/178 (62.36%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP------------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+CD ISD ILDA + +DP+++VA ET   T LV V GEI T   V    +VR T   IGF S D+G D   C V V I +QS +IAQGV   L  R             + +GAGDQG MFGYAT+ETPE+MPL   LA +L  +LTEVRK G  P LRPDGKTQVT  Y
Sbjct:   11 VTEGHPDKICDAISDKILDALIAKDPEARVAVETVVTTGLVHVVGEIRTTTYVEIPALVRKTLLEIGFNSSDMGFDGSTCGVSVAIGEQSQEIAQGVDTALEHRSHDAEGGAELDEIDRLGAGDQGLMFGYATNETPEYMPLPIALAHRLSRRLTEVRKKGIVPHLRPDGKTQVTFAY 188          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK1_RHOPB (S-adenosylmethionine synthetase 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=metK1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.396e-43
Identity = 85/166 (51.20%), Postives = 110/166 (66.27%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+CDQISD ILDAC+ QDP S+VA ET    N+ ++ GEITT A ++ E+  R   + IG+    +G D+D+C +L  +  QSPDI  GV      R +E+GAGDQG  +GYA DET   MP+   LA  L  +LT +R++GT PWLRPDGK QVT+ Y
Sbjct:   11 VTEGHPDKVCDQISDGILDACVAQDPASRVAVETLVSGNIAVIAGEITTTAQIDAERTARAVIKAIGYDDPALGFDSDSCFILTNLRTQSPDINLGV-----SRGDELGAGDQGVFYGYACDETANLMPIPIALAHTLSLRLTMMRRDGTLPWLRPDGKVQVTMRY 171          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_TREDE (S-adenosylmethionine synthetase OS=Treponema denticola GN=metK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.741e-43
Identity = 88/167 (52.69%), Postives = 110/167 (65.87%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHG-HLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDKLCDQISDA+LDACL  DP+S VACET   T LV+V GEITT   V+ ++I R     IG+ + D GLD  +  V+  I  QSPDI+QGV G  L +   + GAGDQG MFG+A  ETPE MP   + +  +     ++RK    PWLRPD KTQ+TV+Y
Sbjct:   13 VSEGHPDKLCDQISDAVLDACLRDDPESHVACETFASTALVLVGGEITTNTYVDIQEIARSIAEEIGYTNTDFGLDCHSMAVMNMIHSQSPDISQGVDGTGLDEYKGQQGAGDQGMMFGFACKETPELMPAPIMFSHSVLRYAAKLRKEKVIPWLRPDSKTQITVKY 179          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_SYNE7 (S-adenosylmethionine synthetase OS=Synechococcus elongatus (strain PCC 7942) GN=metK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.741e-43
Identity = 88/173 (50.87%), Postives = 112/173 (64.74%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGV-------HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+CDQISD ILDA L +DP S+VA E    T LV++ GE++T+A  N   + R     IG+  +D G  A+NC VL+ +++QSPDIAQGV            +R + IGAGDQG MFGYA +E PE MPL   L+ +L  +L  VR NG   +LRPDGKTQVT+ Y
Sbjct:   12 VTEGHPDKICDQISDTILDALLTEDPSSRVAAEVVVNTGLVLITGEVSTQAQTNLIDLARRKIAEIGYTGEDSGFGANNCTVLIALDKQSPDIAQGVDTAQEQRQASSDERFDSIGAGDQGIMFGYACNEAPELMPLPISLSHRLARQLAVVRHNGQLDYLRPDGKTQVTIAY 184          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_STACT (S-adenosylmethionine synthetase OS=Staphylococcus carnosus (strain TM300) GN=metK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.741e-43
Identity = 91/173 (52.60%), Postives = 116/173 (67.05%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR----PEEI---GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+ DQISDAILD  L++DPD++VACET   T + M+ GEI+T   V++ K+VRDT   IG+     G D+    V+  I++QSPDIAQ V   L  R     EEI   GAGDQG MFG+AT+ET  +MP     + QL  +L++VRK+GT  +LRPDGK QVTVEY
Sbjct:   13 VTEGHPDKIADQISDAILDELLKKDPDARVACETVVTTGMAMIVGEISTATYVDFPKVVRDTVEEIGYTRAKYGYDSQTMAVMSAIDEQSPDIAQAVDRALEYRNEISEEEIEATGAGDQGLMFGFATNETDTYMPTPIYFSHQLAKRLSDVRKDGTLKYLRPDGKVQVTVEY 185          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_RALEJ (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain JMP134) GN=metK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.741e-43
Identity = 89/166 (53.61%), Postives = 115/166 (69.28%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDA+LDA L QD  ++VA ET   T LV++ GEITT ANV+Y ++ RDT + IG+ + + G+D   C VLV  ++QSPDIAQGV    S      GAGDQG MFGYA DETPE MP     + +L  + +++R++G  PWLRPD K+QVTV Y
Sbjct:   12 VSEGHPDKVADQISDAVLDAILAQDKYARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGV-DRASDDYLNQGAGDQGLMFGYACDETPELMPFPIYYSHRLVERQSQLRRDGRLPWLRPDAKSQVTVRY 176          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_PROM5 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9515) GN=metK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.741e-43
Identity = 89/170 (52.35%), Postives = 121/170 (71.18%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDV-GLDADNCKVLVYIEQQSPDIAQGVH--GHLSKRPE-EIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+CDQISDA+LDA L++DP+S+VACET   T L ++ GEIT++A ++Y K+VR   + IG+      G D+++C VLV +++QSPDI+QGV+    L++  E   GAGDQG MFGYA DETPE MPL   LA +L  +L +VR      +L PDGKTQV+++Y
Sbjct:   11 VTEGHPDKICDQISDAVLDALLKEDPESRVACETVVNTGLCLLTGEITSRAKLDYIKLVRKVIKEIGYEGAKAGGFDSNSCAVLVALDEQSPDISQGVNEADDLNEDLENNTGAGDQGIMFGYACDETPELMPLPISLAHRLARQLAKVRHENVLEYLLPDGKTQVSIDY 180          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_MOOTA (S-adenosylmethionine synthetase OS=Moorella thermoacetica (strain ATCC 39073) GN=metK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.741e-43
Identity = 87/173 (50.29%), Postives = 111/173 (64.16%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVH-------GHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+ D+I+DA+LDA   +D  ++VACE    T L++V G+ITT   V+  ++ R+T R IG+     G D D C V+  I++QSPDIA GV+       G      E +GAGDQG MFGYAT ETPEFMP+   LA  L  +L  VRK    P+LRPDGK+QVTVEY
Sbjct:   11 VTEGHPDKIADRIADAVLDAIYAKDNQARVACECLVSTGLILVAGQITTDCYVDIPRVARETVREIGYTRAKFGFDCDTCAVITSIDEQSPDIAMGVNEAWEKKQGEARDEVETLGAGDQGMMFGYATSETPEFMPMPIALAHALTRRLAAVRKERILPYLRPDGKSQVTVEY 183          
The following BLAST results are available for this feature:
BLAST of CX299677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ACISJ2.577e-4354.82S-adenosylmethionine synthetase OS=Acidovorax sp. ... [more]
METK_PROM93.366e-4352.94S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_CORJK3.366e-4353.37S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK1_RHOPB4.396e-4351.20S-adenosylmethionine synthetase 1 OS=Rhodopseudomo... [more]
METK_TREDE5.741e-4352.69S-adenosylmethionine synthetase OS=Treponema denti... [more]
METK_SYNE75.741e-4350.87S-adenosylmethionine synthetase OS=Synechococcus e... [more]
METK_STACT5.741e-4352.60S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_RALEJ5.741e-4353.61S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_PROM55.741e-4352.35S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_MOOTA5.741e-4350.29S-adenosylmethionine synthetase OS=Moorella thermo... [more]

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Properties
Property NameValue
Genbank descriptionC07001A05SK NTLeaf1 Citrus clementina cDNA clone C07001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299677 ID=CX299677; Name=CX299677; organism=Citrus clementina; type=EST; length=516bp
CACGAGGGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTCCG
ATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGGCT
TGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATCAC
AACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCGCA
ACATTGGATTTGCCTCTGATGATGTGGGTTTGGATGCTGATAACTGTAAG
GTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTTCA
TGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATCAGGGGC
ATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGT
CATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAA
TGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTG
AGTATTACAATGAGAA
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