CX299677

Overview
NameCX299677
Unique NameCX299677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:113..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_PSEPF (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain Pf0-1) GN=metK PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.860e-42
Identity = 88/166 (53.01%), Postives = 111/166 (66.87%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDA+LDA + QD  ++VA ET  KT + +V GE+TT A V+ E+IVRD   +IG+ S DVG D   C V+  I +QSPDI QGV      +PE+ GAGDQG MFGYA++ET   MP     + QL  +  E RK+G  PWLRPD K+QVT  Y
Sbjct:   12 VSEGHPDKIADQISDAVLDAIIAQDKHARVAVETLVKTGVAIVAGEVTTSAWVDLEQIVRDVICDIGYTSSDVGFDGATCGVMNIIGKQSPDINQGVD---RAKPEDQGAGDQGLMFGYASNETDVLMPAPITFSHQLVQRQAEARKSGLLPWLRPDAKSQVTCRY 174          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_PSEF5 (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=metK PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.860e-42
Identity = 88/166 (53.01%), Postives = 111/166 (66.87%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDA+LDA + QD  ++VA ET  KT + +V GE+TT A V+ E+IVRD   +IG+ S DVG D   C V+  I +QSPDI QGV      +PE+ GAGDQG MFGYA++ET   MP     + QL  +  E RK+G  PWLRPD K+QVT  Y
Sbjct:   12 VSEGHPDKIADQISDAVLDAIIAQDKHARVAVETLVKTGVAIVAGEVTTSAWVDLEQIVRDVICDIGYTSSDVGFDGATCGVMNIIGKQSPDINQGVD---RAKPEDQGAGDQGLMFGYASNETEVLMPAPITFSHQLVQRQAEARKSGLLPWLRPDAKSQVTCRY 174          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_MYCPA (S-adenosylmethionine synthetase OS=Mycobacterium paratuberculosis GN=metK PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.860e-42
Identity = 95/179 (53.07%), Postives = 114/179 (63.69%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKI---VRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI-------GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNE 514
            V EGHPDK+CD ISD++LDA L QDP S+VA ET   T  V V GE+TT A   +  I   VR+   +IG+ S D G D  +C V + I  QSPDIAQGV      R E         GAGDQG MFGYA  +TPE MPL   LA +L  +LTEVRK+G  P+LRPDGKTQVT+EY ++
Sbjct:   13 VTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAIKDTPEMMPLPIALAHRLSRRLTEVRKSGVLPYLRPDGKTQVTIEYEDD 191          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_MYCA1 (S-adenosylmethionine synthetase OS=Mycobacterium avium (strain 104) GN=metK PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.860e-42
Identity = 95/179 (53.07%), Postives = 115/179 (64.25%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKI---VRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI-------GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNE 514
            V EGHPDK+CD ISD++LDA L QDP S+VA ET   T  V V GE+TT A   +  I   VR+   +IG+ S D G D  +C V + I  QSPDIAQGV      R E         GAGDQG MFGYA ++TPE MPL   LA +L  +LTEVRKNG  P+LRPDGKTQVT+E+ ++
Sbjct:   13 VTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIEFEDD 191          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_HAMD5 (S-adenosylmethionine synthetase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=metK PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.860e-42
Identity = 90/166 (54.22%), Postives = 113/166 (68.07%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDA+LDA L QDP ++VACET  KT +V+V GEITT A V+ E+I R T   IG+   D+G DA +C VL  I +QSPDI QGV       P + GAGDQG MFGYAT+ET   MP     + +L  + +E+RK G  PWLRPD K+Q+T +Y
Sbjct:   11 VSEGHPDKIADQISDAVLDAILIQDPKARVACETYVKTGMVIVGGEITTSAWVDIEEITRCTLAEIGYVHSDMGFDAHSCAVLSAIGKQSPDINQGVD---RIDPLDQGAGDQGMMFGYATNETDVLMPAPITYSHRLVKRQSEMRKIGQLPWLRPDAKSQITFKY 173          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_CORK4 (S-adenosylmethionine synthetase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=metK PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.860e-42
Identity = 93/176 (52.84%), Postives = 110/176 (62.50%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKR-------PEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNE 514
            V EGHPDK+CD ISD+ILDA L  DPDS VA ET   T  V V GE+  +  V    +VR T RNIGF S D+G D   C V V I +QS +I  GV   L  R        +  GAGDQG MFGYAT+ETPE+MPL   LA +L  +LT VRK+   P LRPDGKTQVT+ Y ++
Sbjct:   11 VTEGHPDKICDAISDSILDAMLAVDPDSHVAVETVVTTGQVHVVGEVRCRGYVEIPSLVRQTLRNIGFLSSDMGFDGATCGVSVSIGEQSLEIGAGVDTALEARDGAEVEDDDRAGAGDQGLMFGYATNETPEYMPLPIALAHRLARRLTAVRKDDIVPHLRPDGKTQVTLAYNDD 186          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_BUCAT (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=metK PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.860e-42
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYN 511
            V+EGHPDK+ DQISDA+LD  L+QD  ++VACET  KT +V++ GEITT A V+ E+I R T  +IG+ + D G DA++C VL  I +QSPDI QG++      P + GAGDQG +FGYAT+ET  FMP     A  L  K +E+RK    PWLRPD K+QVT +Y N
Sbjct:   11 VSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGINRF---DPLKQGAGDQGIIFGYATNETEFFMPAPITYAHLLMQKQSELRKKNILPWLRPDAKSQVTFKYNN 175          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_BUCAI (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metK PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.860e-42
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYN 511
            V+EGHPDK+ DQISDA+LD  L+QD  ++VACET  KT +V++ GEITT A V+ E+I R T  +IG+ + D G DA++C VL  I +QSPDI QG++      P + GAGDQG +FGYAT+ET  FMP     A  L  K +E+RK    PWLRPD K+QVT +Y N
Sbjct:   11 VSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGINRF---DPLKQGAGDQGIIFGYATNETEFFMPAPITYAHLLMQKQSELRKKNILPWLRPDAKSQVTFKYNN 175          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_BUCA5 (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=metK PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.860e-42
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYN 511
            V+EGHPDK+ DQISDA+LD  L+QD  ++VACET  KT +V++ GEITT A V+ E+I R T  +IG+ + D G DA++C VL  I +QSPDI QG++      P + GAGDQG +FGYAT+ET  FMP     A  L  K +E+RK    PWLRPD K+QVT +Y N
Sbjct:   11 VSEGHPDKIADQISDALLDEILKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRKTINDIGYVNSDAGFDANSCAVLSAIGKQSPDINQGINRF---DPLKQGAGDQGIIFGYATNETEFFMPAPITYAHLLMQKQSELRKKNILPWLRPDAKSQVTFKYNN 175          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_BLOPB (S-adenosylmethionine synthetase OS=Blochmannia pennsylvanicus (strain BPEN) GN=metK PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.860e-42
Identity = 90/167 (53.89%), Postives = 117/167 (70.06%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGV-HGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDAILD+ L QDP ++VACET  KT +V++ GEITT A VN E+I R+T R+IG+   D+G DA++C +L  I +QS DI   + HG+ S    + GAGDQG MFGYAT+ET  FMP     A +L  + ++VRK+G  PWL  D K+QVTV Y
Sbjct:   11 VSEGHPDKIADQISDAILDSILAQDPRARVACETYVKTGIVIMGGEITTTAWVNMEEIARNTIRDIGYVHSDMGFDANSCVILSVINKQSSDIQYSIDHGNTSTL--QRGAGDQGLMFGYATNETSVFMPAPITYAHRLIKRKSQVRKSGVLPWLGLDAKSQVTVAY 175          
The following BLAST results are available for this feature:
BLAST of CX299677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PSEPF4.860e-4253.01S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_PSEF54.860e-4253.01S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_MYCPA4.860e-4253.07S-adenosylmethionine synthetase OS=Mycobacterium p... [more]
METK_MYCA14.860e-4253.07S-adenosylmethionine synthetase OS=Mycobacterium a... [more]
METK_HAMD54.860e-4254.22S-adenosylmethionine synthetase OS=Hamiltonella de... [more]
METK_CORK44.860e-4252.84S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_BUCAT4.860e-4252.98S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCAI4.860e-4252.98S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BUCA54.860e-4252.98S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BLOPB4.860e-4253.89S-adenosylmethionine synthetase OS=Blochmannia pen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07001A05SK NTLeaf1 Citrus clementina cDNA clone C07001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299677 ID=CX299677; Name=CX299677; organism=Citrus clementina; type=EST; length=516bp
CACGAGGGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTCCG
ATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGGCT
TGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATCAC
AACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCGCA
ACATTGGATTTGCCTCTGATGATGTGGGTTTGGATGCTGATAACTGTAAG
GTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTTCA
TGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATCAGGGGC
ATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGT
CATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAA
TGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTG
AGTATTACAATGAGAA
back to top