CX299677

Overview
NameCX299677
Unique NameCX299677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:113..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK1_YEAST (S-adenosylmethionine synthetase 1 OS=Saccharomyces cerevisiae GN=SAM1 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 3.136e-57
Identity = 108/169 (63.91%), Postives = 130/169 (76.92%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNE 514
            V EGHPDK+CDQ+SDAILDACL +DP SKVACET  KT ++MVFGEITTKA ++Y+KIVRDT + IG+     G D   C VLV IEQQSPDIAQGVH    K  E+IGAGDQG MFGYATDETPE +PL+ +LA +L   + + R++G+  WLRPD KTQVTVEY ++
Sbjct:   12 VGEGHPDKICDQVSDAILDACLAEDPHSKVACETAAKTGMIMVFGEITTKAQLDYQKIVRDTIKKIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGVHE--EKDLEDIGAGDQGIMFGYATDETPEGLPLTILLAHKLNMAMADARRDGSLAWLRPDTKTQVTVEYKDD 178          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_LEIIN (S-adenosylmethionine synthetase OS=Leishmania infantum GN=METK PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.033e-56
Identity = 108/166 (65.06%), Postives = 130/166 (78.31%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDKLCDQ+SDA+LDACL  DP SKVACE+C KT +VMVFGEITTKA ++Y+KIVR+T ++IGF S D GLD ++C VLV IEQQSPDI QG+    S   E++GAGDQG MFGYATDET   MPL++ LA  L  K +E+R++G+  W RPD KTQVTVEY
Sbjct:   13 VTEGHPDKLCDQVSDAVLDACLAGDPFSKVACESCAKTGMVMVFGEITTKAVLDYQKIVRNTIKDIGFDSADKGLDYESCNVLVAIEQQSPDICQGLGNFDS---EDLGAGDQGMMFGYATDETETLMPLTYELARGLAKKYSELRRSGSLEWARPDAKTQVTVEY 175          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.317e-55
Identity = 102/169 (60.36%), Postives = 130/169 (76.92%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNE 514
            V EGHPDK+ DQ+SDAILDACL +DP SKVACET TKT ++MVFGEITTKA ++Y+K+VR+  ++IG+     G D   C +LV IE+QSPDIAQG+  HL  R E +GAGDQG MFGYATDETPE  PL+ + A +L A ++  R++G+ PWLRPD KTQVT+EY ++
Sbjct:   24 VGEGHPDKIADQVSDAILDACLAEDPLSKVACETATKTGMIMVFGEITTKAKLDYQKVVRNAIKDIGYDDSSKGFDYKTCNLLVAIEEQSPDIAQGL--HLDDRLENLGAGDQGIMFGYATDETPELFPLTLLFAHKLNAAMSAARRDGSLPWLRPDTKTQVTIEYKHD 190          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.238e-54
Identity = 100/166 (60.24%), Postives = 131/166 (78.92%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+CDQISDA+LDA L+QDP++KVACET TKT +VM+ GEIT+KA V+Y+ +VR     IGF    +G D   C VLV +EQQSP+IA GV  H++K  E++GAGDQG MFGYATDET E MPL+ +L+ ++ A+L ++R+NGT PW+RPD K+QVT+EY
Sbjct:   12 VSEGHPDKMCDQISDAVLDAHLKQDPNAKVACETVTKTGMVMLCGEITSKAVVDYQVLVRRVIEKIGFTDSSIGFDHKTCNVLVALEQQSPEIAAGV--HVNKDGEDVGAGDQGIMFGYATDETEETMPLTLILSHKINAELHKLRRNGTLPWVRPDSKSQVTIEY 175          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK1_HUMAN (S-adenosylmethionine synthetase isoform type-1 OS=Homo sapiens GN=MAT1A PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 5.535e-54
Identity = 100/169 (59.17%), Postives = 131/169 (77.51%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNE 514
            V EGHPDK+CDQISDA+LDA L+QDP++KVACET  KT +V++ GEIT+ A V+Y+++VRDT ++IG+     G D   C VLV +EQQSPDIAQ V  HL +  E++GAGDQG MFGYATDET E MPL+ +LA +L A++ ++R++G  PWLRPD KTQVTV+Y  +
Sbjct:   25 VGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDSKTQVTVQYMQD 191          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK1_RAT (S-adenosylmethionine synthetase isoform type-1 OS=Rattus norvegicus GN=Mat1a PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.233e-53
Identity = 99/169 (58.58%), Postives = 130/169 (76.92%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNE 514
            V EGHPDK+CDQISDA+LDA L+QDP++KVACET  KT +V++ GEIT+ A ++Y+++VRDT ++IG+     G D   C VLV +EQQSPDIAQ V  HL +  E++GAGDQG MFGYATDET E MPL+ VLA +L  ++ ++R++G  PWLRPD KTQVTV+Y  +
Sbjct:   26 VGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQD 192          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK1_MOUSE (S-adenosylmethionine synthetase isoform type-1 OS=Mus musculus GN=Mat1a PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.233e-53
Identity = 100/169 (59.17%), Postives = 130/169 (76.92%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNE 514
            V EGHPDK+CDQISDA+LDA L+QDP++KVACET  KT +V++ GEIT+ A V+Y+++VRDT ++IG+     G D   C VLV +EQQSPDIAQ V  HL +  E++GAGDQG MFGYATDET E MPL+ VLA +L  ++ ++R++G  PWLRPD KTQVTV+Y  +
Sbjct:   26 VGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSVAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRIADLRRSGVLPWLRPDSKTQVTVQYMQD 192          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 6.120e-53
Identity = 99/166 (59.64%), Postives = 130/166 (78.31%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V EGHPDK+CDQISDA+LDA L+QDP++KVACET  KT +V++ GEIT+ A V+Y+++VR+T ++IG+     G D   C VLV +EQQSPDIAQ V  HL +  E++GAGDQG MFGYATDET E MPL+ +LA +L A++ E+R++G  PWL+PD KTQVTV+Y
Sbjct:   26 VGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRETIQHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGDQGLMFGYATDETEECMPLTIMLAHRLNARMAELRRSGQLPWLQPDSKTQVTVQY 189          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_LACRJ (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain JCM 1112) GN=metK PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 3.967e-52
Identity = 102/172 (59.30%), Postives = 128/172 (74.42%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDAILD  L++DPDS+VA ET   T LV+VFGE++TKA VN ++IVRDT R IG+     G DADNC V+  I++QSPDIAQGV   L  R       ++IGAGDQG MFGYATDETPE+MPL+ VL+ +L  K+ ++RK+G   +LRPD K +VTVEY
Sbjct:   12 VSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGEADPLDKIGAGDQGLMFGYATDETPEYMPLTLVLSHKLMRKIAQLRKDGVISYLRPDAKAEVTVEY 183          
BLAST of CX299677 vs. ExPASy Swiss-Prot
Match: METK_LACRD (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain DSM 20016) GN=metK PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 3.967e-52
Identity = 102/172 (59.30%), Postives = 128/172 (74.42%), Query Frame = 2
Query:    8 VNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFASDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY 505
            V+EGHPDK+ DQISDAILD  L++DPDS+VA ET   T LV+VFGE++TKA VN ++IVRDT R IG+     G DADNC V+  I++QSPDIAQGV   L  R       ++IGAGDQG MFGYATDETPE+MPL+ VL+ +L  K+ ++RK+G   +LRPD K +VTVEY
Sbjct:   12 VSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGEADPLDKIGAGDQGLMFGYATDETPEYMPLTLVLSHKLMRKIAQLRKDGVISYLRPDAKAEVTVEY 183          
The following BLAST results are available for this feature:
BLAST of CX299677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_YEAST3.136e-5763.91S-adenosylmethionine synthetase 1 OS=Saccharomyces... [more]
METK_LEIIN2.033e-5665.06S-adenosylmethionine synthetase OS=Leishmania infa... [more]
METK_NEUCR1.317e-5560.36S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK1_CAEEL4.238e-5460.24Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]
METK1_HUMAN5.535e-5459.17S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_RAT1.233e-5358.58S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_MOUSE1.233e-5359.17S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK1_BOVIN6.120e-5359.64S-adenosylmethionine synthetase isoform type-1 OS=... [more]
METK_LACRJ3.967e-5259.30S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK_LACRD3.967e-5259.30S-adenosylmethionine synthetase OS=Lactobacillus r... [more]

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Properties
Property NameValue
Genbank descriptionC07001A05SK NTLeaf1 Citrus clementina cDNA clone C07001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299677 ID=CX299677; Name=CX299677; organism=Citrus clementina; type=EST; length=516bp
CACGAGGGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTCCG
ATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGGCT
TGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATCAC
AACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCGCA
ACATTGGATTTGCCTCTGATGATGTGGGTTTGGATGCTGATAACTGTAAG
GTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTTCA
TGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATCAGGGGC
ATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGT
CATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAA
TGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTG
AGTATTACAATGAGAA
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