CX299679

Overview
NameCX299679
Unique NameCX299679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12696 contig Ccv1_Contig12696:442..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: KDSD_YERPE (Arabinose 5-phosphate isomerase OS=Yersinia pestis GN=kdsD PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.923e-23
Identity = 47/135 (34.81%), Postives = 81/135 (60.00%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            L+ ++S   + +    D+++ + V +E CP  LAP TST   +V GD +A+A++ AR  T++++A +HP G +G+ L+ ++ D+M    E+P       + D L+E+T K  G  ++ D+   + G FTDGDLRR
Sbjct:  126 LICMSSNPESTMGKAADIHLCINVPQEACPLGLAPTTSTTATLVMGDALAVALLKARGFTQEDFALSHPGGALGRKLLLRISDIMHTGTEIPTVSPDASLRDALLEITRKSLGLTVICDDSMRIKGIFTDGDLRR 260          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: GUTQ_ECOLI (Protein gutQ OS=Escherichia coli (strain K12) GN=gutQ PE=3 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   22 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            TS  G A  AV D++V    ERE CP  LAP +ST   ++ GD +A+A+M AR    +++A +HPAG +G  L+ KV  +M+    +P       +MD ++EL+  G G + V D +  + G FTDGDLRR
Sbjct:  127 TSPLGLAAKAVLDISV----EREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRR 253          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: Y1429_HELPY (Uncharacterized protein HP_1429 OS=Helicobacter pylori GN=HP_1429 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.149e-19
Identity = 42/135 (31.11%), Postives = 81/135 (60.00%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            +++ T    ++L+ + D  + L +++E CP + AP TST + +  GD +   +M A+N +++++A+ HP G +GK L  KV+D+++    LP+        D L+E++ K  G  ++++E   L+G  +DGD+RR
Sbjct:  126 IITFTKSPNSSLSKLGDYYLSLKIQKEACPINTAPTTSTTLTLALGDVLMACLMRAKNFSQEDFASFHPGGLLGKKLFVKVKDLLQT-TNLPLIAPSTSFKDALIEMSEKRLGSAILVNEANELVGVLSDGDVRR 259          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: YE29_HELPJ (Uncharacterized protein jhp_1324 OS=Helicobacter pylori J99 GN=jhp_1324 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.368e-19
Identity = 41/135 (30.37%), Postives = 81/135 (60.00%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            +++ T    ++L+ + D  + L +++E CP + AP TST + +  GD +   +M A+N +++++A+ HP G +GK L  KV+D+++    LP+        D L+E++ K  G  +++++   L+G  +DGD+RR
Sbjct:  126 IITFTKSPTSSLSKLGDYYLSLKIKKEACPINTAPTTSTTLTLALGDVLMACLMRAKNFSQEDFASFHPGGLLGKKLFVKVKDLLQT-TNLPLIAPSTSFKDALIEMSEKRLGSAILVNDNNELVGVLSDGDVRR 259          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: Y1678_HAEIN (Probable phosphosugar isomerase HI1678 OS=Haemophilus influenzae GN=HI1678 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.397e-17
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    1 GAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            G  +++VTS + + LA   D  + + VERE+CP +LAP TS  + +  GD +A++++ ARN    ++A  HP G +G+ L+ KV+D M+    LP         D L  +     G  LV++ E  L G  TDGD+RR
Sbjct:  140 GNKIIAVTSNKNSTLARHADYVLDITVEREVCPNNLAPTTSALVTLALGDALAVSLITARNFQPADFAKFHPGGSLGRRLLCKVKDQMQ--TRLPTILPTTNFTDCLTVMNEGRMGVALVMENE-QLKGIITDGDIRR 274          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: KPSF5_ECOLX (Polysialic acid capsule expression protein kpsF OS=Escherichia coli GN=kpsF PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.130e-17
Identity = 50/139 (35.97%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 GAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGC-GCLLVIDEEYHLIGTFTDGDLRR 414
            G  ++++T+   + LA   D  + L +  E CP +LAP TST + M  GD +AIAM+  R    +++A  HP G +G+ L+ +V DVM+   ++P   + D     +++  + GC G ++V D E  L G  TDGDLRR
Sbjct:  130 GNRIIAITNNGNSTLAKNADAVLELHMANETCPNNLAPTTSTTLTMAIGDALAIAMIHQRKFMPNDFARYHPGGSLGRRLLTRVADVMQ--HDVPAV-QLDASFKTVIQRITSGCQGMVMVEDAEGGLAGIITDGDLRR 265          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: KPSF1_ECOLX (Polysialic acid capsule expression protein kpsF OS=Escherichia coli GN=kpsF PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.130e-17
Identity = 50/139 (35.97%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 GAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGC-GCLLVIDEEYHLIGTFTDGDLRR 414
            G  ++++T+   + LA   D  + L +  E CP +LAP TST + M  GD +AIAM+  R    +++A  HP G +G+ L+ +V DVM+   ++P   + D     +++  + GC G ++V D E  L G  TDGDLRR
Sbjct:  130 GNRIIAITNNGNSTLAKNADAVLELHMANETCPNNLAPTTSTTLTMAIGDALAIAMIRQRKFMPNDFARYHPGGSLGRRLLTRVADVMQ--HDVPAV-QLDASFKTVIQRITSGCQGMVMVEDAEGGLAGIITDGDLRR 265          
BLAST of CX299679 vs. ExPASy Swiss-Prot
Match: Y505_RICPR (Uncharacterized protein RP505 OS=Rickettsia prowazekii GN=RP505 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.239e-14
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   10 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPHKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 414
            + ++T  + + LA   D  + +P  +E       P  S+ I +  GD +   +   R  TRD++   HP G IG +L  K++++M+   E+P+  E     + ++ +  K  GC LV D+E +LIG  TDGDLRR
Sbjct:  121 IAAMTMNKNSTLAKRSDFLLKIPECQEASLIG-TPTISSLIMLSLGDAIMTVIHEERGFTRDDFKIYHPGGTIGANLT-KIKNIMRSGDEIPLVYEDTSFTETIIIMNKKRLGCTLVTDKEQNLIGIITDGDLRR 253          
The following BLAST results are available for this feature:
BLAST of CX299679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
KDSD_YERPE2.923e-2334.81Arabinose 5-phosphate isomerase OS=Yersinia pestis... [more]
GUTQ_ECOLI1.773e-2040.46Protein gutQ OS=Escherichia coli (strain K12) GN=g... [more]
Y1429_HELPY1.149e-1931.11Uncharacterized protein HP_1429 OS=Helicobacter py... [more]
YE29_HELPJ4.368e-1930.37Uncharacterized protein jhp_1324 OS=Helicobacter p... [more]
Y1678_HAEIN2.397e-1736.23Probable phosphosugar isomerase HI1678 OS=Haemophi... [more]
KPSF5_ECOLX3.130e-1735.97Polysialic acid capsule expression protein kpsF OS... [more]
KPSF1_ECOLX3.130e-1735.97Polysialic acid capsule expression protein kpsF OS... [more]
Y505_RICPR3.239e-1431.85Uncharacterized protein RP505 OS=Rickettsia prowaz... [more]

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Properties
Property NameValue
Genbank descriptionC07001A07SK NTLeaf1 Citrus clementina cDNA clone C07001A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299679 ID=CX299679; Name=CX299679; organism=Citrus clementina; type=EST; length=414bp
GGGGCCTACTTGGTGTCGGTGACGTCCGTTGAGGGCAACGCCCTTGCGGC
TGTTTGTGATATGAACGTGCATTTGCCCGTGGAGAGGGAGCTGTGCCCGT
TTGATTTGGCGCCGGTCACCTCGACTGCTATTCAAATGGTGTTTGGGGAC
ACGGTGGCGATTGCGATGATGGGTGCCAGGAATTTGACTAGAGATGAGTA
CGCGGCTAATCACCCTGCTGGAAGGATCGGTAAAAGCTTGATTTTTAAGG
TGCAAGATGTAATGAAGCCGCATAAGGAGCTTCCTGTTTGCAAGGAGGGA
GATTTGATAATGGATCAGCTGGTGGAGCTCACAAGTAAAGGATGTGGGTG
TTTGCTGGTTATTGATGAGGAGTATCACCTGATTGGGACGTTTACTGATG
GTGATCTGCGCCGT
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