CX299680

Overview
NameCX299680
Unique NameCX299680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14154 contig Ccv1_Contig14154:208..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSAB_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial OS=Xenopus laevis GN=sdha-B PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.372e-66
Identity = 118/174 (67.82%), Postives = 134/174 (77.01%), Query Frame = 2
Query:   14 RSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            R   S   S + +  Y +VDH +D                LSE GFNTACITKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM  +AP +VIELENYG+PFSRTE GKIYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   43 RKDTSAKVSDSISTQYPVVDHDFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVIELENYGMPFSRTEQGKIYQRAFGGQSLKYGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 216          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSAA_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit A, mitochondrial OS=Xenopus laevis GN=sdha-A PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.372e-66
Identity = 118/174 (67.82%), Postives = 134/174 (77.01%), Query Frame = 2
Query:   14 RSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            R   S   S + +  Y +VDH +D                LSE GFNTACITKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM  +AP +VIELENYG+PFSRTE GKIYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   43 RKDTSAKVSDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVIELENYGMPFSRTEQGKIYQRAFGGQSLKYGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 216          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 7.016e-66
Identity = 113/159 (71.07%), Postives = 130/159 (81.76%), Query Frame = 2
Query:   59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM  +AP AV+ELEN+G+PFSRT+DGKIYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   52 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEQDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENFGMPFSRTDDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 210          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_CHICK (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Gallus gallus GN=SDHA PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 7.016e-66
Identity = 114/159 (71.70%), Postives = 130/159 (81.76%), Query Frame = 2
Query:   59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM +D+WRWH YDTVKGSDWLGDQDAI YM  +AP AVIELENYG+PFSRTE+GKIYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   56 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 214          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_RAT (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Rattus norvegicus GN=Sdha PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.197e-65
Identity = 113/159 (71.07%), Postives = 130/159 (81.76%), Query Frame = 2
Query:   59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            Y +VDH +D                LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM  +AP +V+ELENYG+PFSRTEDG+IYQRAFGGQSL  GKGGQA+RC C ADRTGH+LLHTLYG++++++T
Sbjct:   47 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGRIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 205          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_DROME (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Drosophila melanogaster GN=Scs-fp PE=2 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 7.757e-65
Identity = 115/158 (72.78%), Postives = 126/158 (79.75%), Query Frame = 2
Query:   59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHN 532
            Y +VDH YD                L   GF TA ITKLFPTRSHT+AAQGGINAALGNM EDDW+WHMYDTVKGSDWLGDQDAI YM REAPKAVIELENYG+PFSRT+DGKIYQRAFGGQSL  GKGGQA+RC   ADRTGH+LLHTLYGQ++ ++
Sbjct:   52 YPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLSYD 209          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_DICDI (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhA PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.728e-64
Identity = 118/170 (69.41%), Postives = 131/170 (77.06%), Query Frame = 2
Query:   29 RLFSTNSTG-GYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            R FST +    Y +VDHTYD                L+E G+ TACITKLFPTRSHTVAAQGGINAALGN  +DDWRWH YDTVKGSD+LGDQDAI YMC+EA   V+ELE YG+PFSR +DG+IYQRAFGGQS + GKGGQA RC  AADRTGHALLHTLYGQA+KHNT
Sbjct:   22 RSFSTQTQSRDYAVVDHTYDAIVVGAGGAGLRAALGLTEKGYKTACITKLFPTRSHTVAAQGGINAALGNADQDDWRWHAYDTVKGSDFLGDQDAIHYMCKEAVPTVLELEQYGVPFSRMDDGRIYQRAFGGQSKNFGKGGQATRCCAAADRTGHALLHTLYGQAVKHNT 191          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Saccharomyces cerevisiae GN=SDH1 PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 3.850e-64
Identity = 113/166 (68.07%), Postives = 133/166 (80.12%), Query Frame = 2
Query:   38 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            S ++ G Y I+DH YD                L+E G+ TACI+KLFPTRSHTVAAQGGINAALGNM +D+W+WHMYDTVKGSDWLGDQD+I YM REAPK++IELE+YG+PFSRTE+GKIYQRAFGGQ+ + GKG QAYR    ADRTGHALLHTLYGQA++H+T
Sbjct:   39 SRSADGKYHIIDHEYDCVVIGAGGAGLRAAFGLAEAGYKTACISKLFPTRSHTVAAQGGINAALGNMHKDNWKWHMYDTVKGSDWLGDQDSIHYMTREAPKSIIELEHYGVPFSRTENGKIYQRAFGGQTKEYGKGAQAYRTCAVADRTGHALLHTLYGQALRHDT 204          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSX_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=YJL045W PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 6.566e-64
Identity = 115/159 (72.33%), Postives = 128/159 (80.50%), Query Frame = 2
Query:   59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            Y I+DH YD                L+E G+ TAC++KLFPTRSHTVAAQGGINAALGNM  DDW+ HMYDTVKGSDWLGDQDAI YM REAPK+VIELE+YG+PFSRTEDG+IYQRAFGGQS D GKGGQAYR    ADRTGHA+LHTLYGQA+K+NT
Sbjct:   40 YHIIDHEYDCVVVGAGGAGLRAAFGLAEAGYKTACLSKLFPTRSHTVAAQGGINAALGNMHPDDWKSHMYDTVKGSDWLGDQDAIHYMTREAPKSVIELEHYGMPFSRTEDGRIYQRAFGGQSKDFGKGGQAYRTCAVADRTGHAMLHTLYGQALKNNT 198          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_CAEEL (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Caenorhabditis elegans GN=sdha-1 PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 1.369e-61
Identity = 111/158 (70.25%), Postives = 123/158 (77.85%), Query Frame = 2
Query:   59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHN 532
            Y +VDH YD                L+E G  TA ITKLFPTRSHTVAAQGGINAALGNM  D+WRWH YDTVKGSDWLGDQDAI YM REA +AVIELENYG+PFSRT DGKIYQRAFGGQS D G+GGQA+R  C ADRTGH+LLHTLYG ++++N
Sbjct:   36 YKVVDHAYDAVVVGAGGAGLRAAMGLAEGGLKTAVITKLFPTRSHTVAAQGGINAALGNMNPDNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQYN 193          
The following BLAST results are available for this feature:
BLAST of CX299680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
DHSAB_XENLA5.372e-6667.82Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSAA_XENLA5.372e-6667.82Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DANRE7.016e-6671.07Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_CHICK7.016e-6671.70Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_RAT1.197e-6571.07Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DROME7.757e-6572.78Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DICDI1.728e-6469.41Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_YEAST3.850e-6468.07Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSX_YEAST6.566e-6472.33Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_CAEEL1.369e-6170.25Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Properties
Property NameValue
Genbank descriptionC07001A08SK NTLeaf1 Citrus clementina cDNA clone C07001A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299680 ID=CX299680; Name=CX299680; organism=Citrus clementina; type=EST; length=535bp
CAATGACTCTCTCAGATCTCATTTCTCCAGATTGTTCTCCACCAATTCCA
CTGGAGGATACACAATAGTGGATCATACATATGATGCTGTAGTTGTTGGA
GCTGGCGGTGCTGGGCTGAGAGCAGCGATTGGGCTTTCAGAGCATGGCTT
CAACACCGCTTGCATTACCAAGCTCTTCCCTACTCGTTCTCACACTGTTG
CGGCTCAGGGTGGTATTAATGCTGCTTTAGGAAACATGACTGAAGATGAC
TGGAGGTGGCACATGTATGACACAGTCAAGGGAAGTGATTGGTTAGGTGA
TCAGGATGCTATTCAATATATGTGTAGGGAGGCACCAAAAGCAGTGATTG
AGCTGGAGAATTACGGGTTACCATTTTCTCGGACAGAAGATGGAAAAATA
TACCAGCGTGCATTTGGCGGTCAAAGTCTTGATTGTGGAAAAGGTGGGCA
GGCGTACCGATGTGCATGTGCTGCTGACAGAACTGGTCATGCTCTATTGC
ATACCCTCTATGGCCAGGCTATGAAACATAATACA
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