CX299680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSAB_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial OS=Xenopus laevis GN=sdha-B PE=2 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 5.372e-66 Identity = 118/174 (67.82%), Postives = 134/174 (77.01%), Query Frame = 2 Query: 14 RSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 R S S + + Y +VDH +D LSE GFNTACITKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM +AP +VIELENYG+PFSRTE GKIYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 43 RKDTSAKVSDSISTQYPVVDHDFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVIELENYGMPFSRTEQGKIYQRAFGGQSLKYGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 216
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSAA_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit A, mitochondrial OS=Xenopus laevis GN=sdha-A PE=2 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 5.372e-66 Identity = 118/174 (67.82%), Postives = 134/174 (77.01%), Query Frame = 2 Query: 14 RSHFSRLFSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 R S S + + Y +VDH +D LSE GFNTACITKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM +AP +VIELENYG+PFSRTE GKIYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 43 RKDTSAKVSDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACITKLFPTRSHTVAAQGGINAALGNMEDDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVIELENYGMPFSRTEQGKIYQRAFGGQSLKYGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 216
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2) HSP 1 Score: 249.595 bits (636), Expect = 7.016e-66 Identity = 113/159 (71.07%), Postives = 130/159 (81.76%), Query Frame = 2 Query: 59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM +DDWRWH YDTVKGSDWLGDQDAI YM +AP AV+ELEN+G+PFSRT+DGKIYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 52 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEQDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENFGMPFSRTDDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 210
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_CHICK (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Gallus gallus GN=SDHA PE=1 SV=2) HSP 1 Score: 249.595 bits (636), Expect = 7.016e-66 Identity = 114/159 (71.70%), Postives = 130/159 (81.76%), Query Frame = 2 Query: 59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM +D+WRWH YDTVKGSDWLGDQDAI YM +AP AVIELENYG+PFSRTE+GKIYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 56 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 214
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_RAT (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Rattus norvegicus GN=Sdha PE=1 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 1.197e-65 Identity = 113/159 (71.07%), Postives = 130/159 (81.76%), Query Frame = 2 Query: 59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM ED+WRWH YDTVKGSDWLGDQDAI YM +AP +V+ELENYG+PFSRTEDG+IYQRAFGGQSL GKGGQA+RC C ADRTGH+LLHTLYG++++++T Sbjct: 47 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGRIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDT 205
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_DROME (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Drosophila melanogaster GN=Scs-fp PE=2 SV=3) HSP 1 Score: 246.128 bits (627), Expect = 7.757e-65 Identity = 115/158 (72.78%), Postives = 126/158 (79.75%), Query Frame = 2 Query: 59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHN 532 Y +VDH YD L GF TA ITKLFPTRSHT+AAQGGINAALGNM EDDW+WHMYDTVKGSDWLGDQDAI YM REAPKAVIELENYG+PFSRT+DGKIYQRAFGGQSL GKGGQA+RC ADRTGH+LLHTLYGQ++ ++ Sbjct: 52 YPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLSYD 209
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_DICDI (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhA PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 1.728e-64 Identity = 118/170 (69.41%), Postives = 131/170 (77.06%), Query Frame = 2 Query: 29 RLFSTNSTG-GYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 R FST + Y +VDHTYD L+E G+ TACITKLFPTRSHTVAAQGGINAALGN +DDWRWH YDTVKGSD+LGDQDAI YMC+EA V+ELE YG+PFSR +DG+IYQRAFGGQS + GKGGQA RC AADRTGHALLHTLYGQA+KHNT Sbjct: 22 RSFSTQTQSRDYAVVDHTYDAIVVGAGGAGLRAALGLTEKGYKTACITKLFPTRSHTVAAQGGINAALGNADQDDWRWHAYDTVKGSDFLGDQDAIHYMCKEAVPTVLELEQYGVPFSRMDDGRIYQRAFGGQSKNFGKGGQATRCCAAADRTGHALLHTLYGQAVKHNT 191
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Saccharomyces cerevisiae GN=SDH1 PE=1 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 3.850e-64 Identity = 113/166 (68.07%), Postives = 133/166 (80.12%), Query Frame = 2 Query: 38 STNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 S ++ G Y I+DH YD L+E G+ TACI+KLFPTRSHTVAAQGGINAALGNM +D+W+WHMYDTVKGSDWLGDQD+I YM REAPK++IELE+YG+PFSRTE+GKIYQRAFGGQ+ + GKG QAYR ADRTGHALLHTLYGQA++H+T Sbjct: 39 SRSADGKYHIIDHEYDCVVIGAGGAGLRAAFGLAEAGYKTACISKLFPTRSHTVAAQGGINAALGNMHKDNWKWHMYDTVKGSDWLGDQDSIHYMTREAPKSIIELEHYGVPFSRTENGKIYQRAFGGQTKEYGKGAQAYRTCAVADRTGHALLHTLYGQALRHDT 204
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSX_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=YJL045W PE=1 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 6.566e-64 Identity = 115/159 (72.33%), Postives = 128/159 (80.50%), Query Frame = 2 Query: 59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 Y I+DH YD L+E G+ TAC++KLFPTRSHTVAAQGGINAALGNM DDW+ HMYDTVKGSDWLGDQDAI YM REAPK+VIELE+YG+PFSRTEDG+IYQRAFGGQS D GKGGQAYR ADRTGHA+LHTLYGQA+K+NT Sbjct: 40 YHIIDHEYDCVVVGAGGAGLRAAFGLAEAGYKTACLSKLFPTRSHTVAAQGGINAALGNMHPDDWKSHMYDTVKGSDWLGDQDAIHYMTREAPKSVIELEHYGMPFSRTEDGRIYQRAFGGQSKDFGKGGQAYRTCAVADRTGHAMLHTLYGQALKNNT 198
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_CAEEL (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Caenorhabditis elegans GN=sdha-1 PE=2 SV=3) HSP 1 Score: 235.343 bits (599), Expect = 1.369e-61 Identity = 111/158 (70.25%), Postives = 123/158 (77.85%), Query Frame = 2 Query: 59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHN 532 Y +VDH YD L+E G TA ITKLFPTRSHTVAAQGGINAALGNM D+WRWH YDTVKGSDWLGDQDAI YM REA +AVIELENYG+PFSRT DGKIYQRAFGGQS D G+GGQA+R C ADRTGH+LLHTLYG ++++N Sbjct: 36 YKVVDHAYDAVVVGAGGAGLRAAMGLAEGGLKTAVITKLFPTRSHTVAAQGGINAALGNMNPDNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELENYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQYN 193 The following BLAST results are available for this feature:
BLAST of CX299680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299680 ID=CX299680; Name=CX299680; organism=Citrus clementina; type=EST; length=535bpback to top |