CX299680

Overview
NameCX299680
Unique NameCX299680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14154 contig Ccv1_Contig14154:208..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_RICTY (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia typhi GN=sdhA PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 5.752e-60
Identity = 105/160 (65.62%), Postives = 123/160 (76.88%), Query Frame = 2
Query:   50 TGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529
            T  Y I+ H +D                +++ G NTACITK+FPTRSHTVAAQGGI+AALGNM EDDWRWHMYDTVKGSDWLGDQDAI+YMC+ AP A++ELE+YG+PFSRTEDGKIYQR FGG + + GKG  A R   AADRTGHA+LHTLY Q++KH
Sbjct:    2 TKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKIFPTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTEDGKIYQRPFGGMTTEYGKGKAAQRTCAAADRTGHAILHTLYQQSLKH 161          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_RICFE (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia felis GN=sdhA PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 9.812e-60
Identity = 105/160 (65.62%), Postives = 123/160 (76.88%), Query Frame = 2
Query:   50 TGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529
            T  Y I+ H +D                +++ G NTACITKLFPTRSHTVAAQGGI+AALGNM EDDWRWHMYDTVKGSDWLGDQDAI+YMC+ AP A++ELE+YG+PFSRTE+GKIYQR FGG + + GKG  A R   AADRTGHA+LHTLY Q++KH
Sbjct:    2 TKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKLFPTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTEEGKIYQRPFGGMTTEYGKGKAAQRTCAAADRTGHAILHTLYQQSLKH 161          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_RICCN (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia conorii GN=sdhA PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 9.812e-60
Identity = 105/160 (65.62%), Postives = 123/160 (76.88%), Query Frame = 2
Query:   50 TGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529
            T  Y I+ H +D                +++ G NTACITKLFPTRSHTVAAQGGI+AALGNM EDDWRWHMYDTVKGSDWLGDQDAI+YMC+ AP A++ELE+YG+PFSRTE+GKIYQR FGG + + GKG  A R   AADRTGHA+LHTLY Q++KH
Sbjct:    2 TKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKLFPTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTEEGKIYQRPFGGMTTEYGKGKAAQRTCAAADRTGHAILHTLYQQSLKH 161          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_RICPR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia prowazekii GN=sdhA PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.729e-59
Identity = 104/160 (65.00%), Postives = 122/160 (76.25%), Query Frame = 2
Query:   50 TGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529
            T  Y I+ H +D                +++ G NTACITK+FPTRSHTVAAQGGI+AALGNM EDDWRWHMYDTVKGSDWLGDQDAI+YMC+ AP A++ELE+YG+PFSRT DGKIYQR FGG + + GKG  A R   AADRTGHA+LHTLY Q++KH
Sbjct:    2 TKAYNIIHHKFDVVVVGAGGAGLRSAFGMAKEGLNTACITKIFPTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTVDGKIYQRPFGGMTTEYGKGKAAQRTCAAADRTGHAILHTLYQQSLKH 161          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_RICBR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 4.870e-59
Identity = 104/160 (65.00%), Postives = 122/160 (76.25%), Query Frame = 2
Query:   50 TGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529
            T  Y I+ H +D                ++E G NTACI+KLFPTRSHTVAAQGGI+AALGNM  DDWRWHMYDTVKGSDWLGDQDAI+YMC+ AP A++ELE+YG+PFSRTE+GKIYQR FGG + + GKG  A R   AADRTGHA+LHTLY Q++KH
Sbjct:    2 TKSYNIIHHKFDVIVVGAGGAGLRAAFGMAEEGLNTACISKLFPTRSHTVAAQGGISAALGNMGADDWRWHMYDTVKGSDWLGDQDAIEYMCKNAPDAILELEHYGVPFSRTEEGKIYQRPFGGMTTEYGKGKAAQRTCAAADRTGHAILHTLYQQSLKH 161          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_PARDE (Succinate dehydrogenase flavoprotein subunit OS=Paracoccus denitrificans GN=sdhA PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 8.895e-53
Identity = 95/156 (60.90%), Postives = 114/156 (73.08%), Query Frame = 2
Query:   59 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMK 526
            Y    H YD                ++E G  TAC+TK+FPTRSHTVAAQGGI A+L NM  D+W+WHMYDTVKGSDWLGD DA++Y+ REAPKAV ELE+YG+PFSRTE+GKIYQR FGG + + G+G    R   AADRTGHA+LHTLYGQ++K
Sbjct:    4 YKYETHEYDVVVVGAGGAGLRATLGMAEQGLRTACVTKVFPTRSHTVAAQGGIAASLSNMGPDNWQWHMYDTVKGSDWLGDTDAMEYLAREAPKAVYELEHYGVPFSRTEEGKIYQRPFGGHTTEFGEGPPVQRTCAAADRTGHAILHTLYGQSLK 159          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_SALTY (Succinate dehydrogenase flavoprotein subunit OS=Salmonella typhimurium GN=sdhA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.597e-48
Identity = 89/134 (66.42%), Postives = 110/134 (82.09%), Query Frame = 2
Query:  134 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            +S+ G   A ++K+FPTRSHTV+AQGGI  ALGN  ED+W WHMYDTVKGSD++GDQDAI+YMC+  P+A++ELE+ GLPFSR +DG+IYQR FGGQS + G G QA R A AADRTGHALLHTLY Q +K++T
Sbjct:   26 ISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG-GEQAARTAAAADRTGHALLHTLYQQNLKNHT 158          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_ECOLI (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli (strain K12) GN=sdhA PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.597e-48
Identity = 89/134 (66.42%), Postives = 110/134 (82.09%), Query Frame = 2
Query:  134 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            +S+ G   A ++K+FPTRSHTV+AQGGI  ALGN  ED+W WHMYDTVKGSD++GDQDAI+YMC+  P+A++ELE+ GLPFSR +DG+IYQR FGGQS + G G QA R A AADRTGHALLHTLY Q +K++T
Sbjct:   26 ISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG-GEQAARTAAAADRTGHALLHTLYQQNLKNHT 158          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_ECOL6 (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O6 GN=sdhA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.597e-48
Identity = 89/134 (66.42%), Postives = 110/134 (82.09%), Query Frame = 2
Query:  134 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            +S+ G   A ++K+FPTRSHTV+AQGGI  ALGN  ED+W WHMYDTVKGSD++GDQDAI+YMC+  P+A++ELE+ GLPFSR +DG+IYQR FGGQS + G G QA R A AADRTGHALLHTLY Q +K++T
Sbjct:   26 ISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG-GEQAARTAAAADRTGHALLHTLYQQNLKNHT 158          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_ECO57 (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O157:H7 GN=sdhA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.597e-48
Identity = 89/134 (66.42%), Postives = 110/134 (82.09%), Query Frame = 2
Query:  134 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            +S+ G   A ++K+FPTRSHTV+AQGGI  ALGN  ED+W WHMYDTVKGSD++GDQDAI+YMC+  P+A++ELE+ GLPFSR +DG+IYQR FGGQS + G G QA R A AADRTGHALLHTLY Q +K++T
Sbjct:   26 ISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG-GEQAARTAAAADRTGHALLHTLYQQNLKNHT 158          
The following BLAST results are available for this feature:
BLAST of CX299680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
DHSA_RICTY5.752e-6065.63Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICFE9.812e-6065.63Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICCN9.812e-6065.63Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICPR3.729e-5965.00Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICBR4.870e-5965.00Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_PARDE8.895e-5360.90Succinate dehydrogenase flavoprotein subunit OS=Pa... [more]
DHSA_SALTY6.597e-4866.42Succinate dehydrogenase flavoprotein subunit OS=Sa... [more]
DHSA_ECOLI6.597e-4866.42Succinate dehydrogenase flavoprotein subunit OS=Es... [more]
DHSA_ECOL66.597e-4866.42Succinate dehydrogenase flavoprotein subunit OS=Es... [more]
DHSA_ECO576.597e-4866.42Succinate dehydrogenase flavoprotein subunit OS=Es... [more]

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Properties
Property NameValue
Genbank descriptionC07001A08SK NTLeaf1 Citrus clementina cDNA clone C07001A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299680 ID=CX299680; Name=CX299680; organism=Citrus clementina; type=EST; length=535bp
CAATGACTCTCTCAGATCTCATTTCTCCAGATTGTTCTCCACCAATTCCA
CTGGAGGATACACAATAGTGGATCATACATATGATGCTGTAGTTGTTGGA
GCTGGCGGTGCTGGGCTGAGAGCAGCGATTGGGCTTTCAGAGCATGGCTT
CAACACCGCTTGCATTACCAAGCTCTTCCCTACTCGTTCTCACACTGTTG
CGGCTCAGGGTGGTATTAATGCTGCTTTAGGAAACATGACTGAAGATGAC
TGGAGGTGGCACATGTATGACACAGTCAAGGGAAGTGATTGGTTAGGTGA
TCAGGATGCTATTCAATATATGTGTAGGGAGGCACCAAAAGCAGTGATTG
AGCTGGAGAATTACGGGTTACCATTTTCTCGGACAGAAGATGGAAAAATA
TACCAGCGTGCATTTGGCGGTCAAAGTCTTGATTGTGGAAAAGGTGGGCA
GGCGTACCGATGTGCATGTGCTGCTGACAGAACTGGTCATGCTCTATTGC
ATACCCTCTATGGCCAGGCTATGAAACATAATACA
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