CX299680

Overview
NameCX299680
Unique NameCX299680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14154 contig Ccv1_Contig14154:208..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_COXBU (Succinate dehydrogenase flavoprotein subunit OS=Coxiella burnetii GN=sdhA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.287e-43
Identity = 84/129 (65.12%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  149 FNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535
            +  A ++K+FPTRSHTV+AQGGI AALGN+  D   WHM+DTVKGSD+LGDQDAIQYMC +AP +V ELE+YGLPFSR +DG+IYQRAFGG + D GK      CAC ADRTGHA+LHTLY + ++  T
Sbjct:   33 YKVAVVSKVFPTRSHTVSAQGGIAAALGNVVPDKPIWHMFDTVKGSDYLGDQDAIQYMCEQAPPSVYELEHYGLPFSRLDDGRIYQRAFGGHTRDFGKEMARRTCAC-ADRTGHAMLHTLYQKNVEAGT 160          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_MYCTU (Fumarate reductase flavoprotein subunit OS=Mycobacterium tuberculosis GN=frdA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.645e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 2
Query:  152 NTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHN 532
            + A ++K++P RSHTV+A+GG  A  G+  +D    H +DTV G DWL DQDA++    EAPK +++LE++G P+SR  DG++  R FGG         +  R   AAD+TG  LLHTL+ + + ++
Sbjct:   31 DVAIVSKVYPMRSHTVSAEGGAAAVTGD--DDSLDEHAHDTVSGGDWLCDQDAVEAFVAEAPKELVQLEHWGCPWSRKPDGRVAVRPFGGM--------KKLRTWFAADKTGFHLLHTLFQRLLTYS 147          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_MYCBO (Fumarate reductase flavoprotein subunit OS=Mycobacterium bovis GN=frdA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.645e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 2
Query:  152 NTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHN 532
            + A ++K++P RSHTV+A+GG  A  G+  +D    H +DTV G DWL DQDA++    EAPK +++LE++G P+SR  DG++  R FGG         +  R   AAD+TG  LLHTL+ + + ++
Sbjct:   31 DVAIVSKVYPMRSHTVSAEGGAAAVTGD--DDSLDEHAHDTVSGGDWLCDQDAVEAFVAEAPKELVQLEHWGCPWSRKPDGRVAVRPFGGM--------KKLRTWFAADKTGFHLLHTLFQRLLTYS 147          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_PROVU (Fumarate reductase flavoprotein subunit OS=Proteus vulgaris GN=frdA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.874e-21
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  158 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529
            A I+K++P RSHTVAA+GG  +A      D + +H  DTV G DWL +QD + Y     P  + +LE +G P+SR EDG +  R FGG  ++        R   AAD+TG  +LHTL+  ++K+
Sbjct:   34 ALISKVYPMRSHTVAAEGG--SAAVTQAHDSYDFHFNDTVSGGDWLCEQDVVDYFVEHCPTEMTQLELWGCPWSRKEDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLFQTSLKY 147          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_HAEIN (Fumarate reductase flavoprotein subunit OS=Haemophilus influenzae GN=frdA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.456e-20
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  158 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529
            A ++K++P R+HTVAA+GG  A +    ED +  H  DTV G DWL +QD ++Y  + +P  + +LE +G P+SR  DG +  R FGG  ++        R   AAD+TG  LLHTL+  ++++
Sbjct:   34 ALVSKVYPMRTHTVAAEGGAAAVIKE--EDSYDKHFQDTVAGGDWLCEQDVVEYFVQHSPVEMTQLERWGCPWSRKADGDVNVRRFGGMKIE--------RTWFAADKTGFHLLHTLFQTSIQY 147          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_ECOLI (Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 9.927e-20
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  158 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMK 526
            A I+K++P RSHTVAA+GG  A   +   D + +H +DTV G DWL +QD + Y     P  + +LE +G P+SR  DG +  R FGG  ++        R   AAD+TG  +LHTL+  +++
Sbjct:   34 ALISKVYPMRSHTVAAEGGSAAVAQD--HDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLFQTSLQ 146          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: Y033_METJA (Uncharacterized FAD-dependent oxidoreductase MJ0033 OS=Methanocaldococcus jannaschii GN=MJ0033 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  173 LFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTL 508
            LF     TV A+GG NA      +D ++ H YDTVKG  ++ +   ++ + + APK ++ LE +G  F RTEDG I QR FGGQS +        R     DRTGH ++  L
Sbjct:   33 LFGKSGCTVMAEGGYNAVFN--PKDSFKKHFYDTVKGGGFINNPKLVEILVKNAPKELLNLERFGALFDRTEDGFIAQRPFGGQSFN--------RTCYCGDRTGHEIMRGL 134          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_HELPY (Fumarate reductase flavoprotein subunit OS=Helicobacter pylori GN=frdA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 2
Query:  140 EHGFNTACITKLFPTRSHTVAAQGGINAALGNMTE---DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGK---------------------IYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529
            + G NT  ++ +   RSH+ AAQGG+ A+L N  +   D+   H  DTVKGSDW  DQ   +     APKA+ EL ++G+P++R + G                      I  R FGG         + +R    AD TGH +L+ +  +A+ H
Sbjct:   26 QKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHVTITERDDRHGYILSRDFGGT--------KKWRTCFTADATGHTMLYAVANEALHH 171          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_HELPJ (Fumarate reductase flavoprotein subunit OS=Helicobacter pylori J99 GN=frdA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14
Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 2
Query:  140 EHGFNTACITKLFPTRSHTVAAQGGINAALGNMTE---DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGK---------------------IYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529
            + G NT  ++ +   RSH+ AAQGG+ A+L N  +   D+   H  DTVKGSDW  DQ   +     APKA+ EL ++G+P++R + G                      I  R FGG         + +R    AD TGH +L+ +  +A+ H
Sbjct:   26 QKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHVIITERDDRHGYILSRDFGGT--------KKWRTCFTADATGHTMLYAVANEALHH 171          
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_BACSU (Succinate dehydrogenase flavoprotein subunit OS=Bacillus subtilis GN=sdhA PE=3 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 4.772e-14
Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  185 RSHTVAAQGGINAALGNMTEDDWRW-HMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529
            RSH+V AQGGIN A+    E D  W H  DTV G D+L +Q  ++ MC  AP  +  L+  G+ F+RT +G +  R FGG         Q +R A A   TG  LL+ L  Q  ++
Sbjct:   39 RSHSVCAQGGINGAVNTKGEGDSPWEHFDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGT--------QHHRTAYAGATTGQQLLYALDEQVRRY 146          
The following BLAST results are available for this feature:
BLAST of CX299680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
DHSA_COXBU1.287e-4365.12Succinate dehydrogenase flavoprotein subunit OS=Co... [more]
FRDA_MYCTU3.645e-2241.73Fumarate reductase flavoprotein subunit OS=Mycobac... [more]
FRDA_MYCBO3.645e-2241.73Fumarate reductase flavoprotein subunit OS=Mycobac... [more]
FRDA_PROVU6.874e-2141.13Fumarate reductase flavoprotein subunit OS=Proteus... [more]
FRDA_HAEIN4.456e-2039.52Fumarate reductase flavoprotein subunit OS=Haemoph... [more]
FRDA_ECOLI9.927e-2039.84Fumarate reductase flavoprotein subunit OS=Escheri... [more]
Y033_METJA4.316e-1539.29Uncharacterized FAD-dependent oxidoreductase MJ003... [more]
FRDA_HELPY2.797e-1432.47Fumarate reductase flavoprotein subunit OS=Helicob... [more]
FRDA_HELPJ2.797e-1432.47Fumarate reductase flavoprotein subunit OS=Helicob... [more]
DHSA_BACSU4.772e-1439.66Succinate dehydrogenase flavoprotein subunit OS=Ba... [more]

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Properties
Property NameValue
Genbank descriptionC07001A08SK NTLeaf1 Citrus clementina cDNA clone C07001A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299680 ID=CX299680; Name=CX299680; organism=Citrus clementina; type=EST; length=535bp
CAATGACTCTCTCAGATCTCATTTCTCCAGATTGTTCTCCACCAATTCCA
CTGGAGGATACACAATAGTGGATCATACATATGATGCTGTAGTTGTTGGA
GCTGGCGGTGCTGGGCTGAGAGCAGCGATTGGGCTTTCAGAGCATGGCTT
CAACACCGCTTGCATTACCAAGCTCTTCCCTACTCGTTCTCACACTGTTG
CGGCTCAGGGTGGTATTAATGCTGCTTTAGGAAACATGACTGAAGATGAC
TGGAGGTGGCACATGTATGACACAGTCAAGGGAAGTGATTGGTTAGGTGA
TCAGGATGCTATTCAATATATGTGTAGGGAGGCACCAAAAGCAGTGATTG
AGCTGGAGAATTACGGGTTACCATTTTCTCGGACAGAAGATGGAAAAATA
TACCAGCGTGCATTTGGCGGTCAAAGTCTTGATTGTGGAAAAGGTGGGCA
GGCGTACCGATGTGCATGTGCTGCTGACAGAACTGGTCATGCTCTATTGC
ATACCCTCTATGGCCAGGCTATGAAACATAATACA
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