CX299680
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_COXBU (Succinate dehydrogenase flavoprotein subunit OS=Coxiella burnetii GN=sdhA PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.287e-43 Identity = 84/129 (65.12%), Postives = 102/129 (79.07%), Query Frame = 2 Query: 149 FNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT 535 + A ++K+FPTRSHTV+AQGGI AALGN+ D WHM+DTVKGSD+LGDQDAIQYMC +AP +V ELE+YGLPFSR +DG+IYQRAFGG + D GK CAC ADRTGHA+LHTLY + ++ T Sbjct: 33 YKVAVVSKVFPTRSHTVSAQGGIAAALGNVVPDKPIWHMFDTVKGSDYLGDQDAIQYMCEQAPPSVYELEHYGLPFSRLDDGRIYQRAFGGHTRDFGKEMARRTCAC-ADRTGHAMLHTLYQKNVEAGT 160
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_MYCTU (Fumarate reductase flavoprotein subunit OS=Mycobacterium tuberculosis GN=frdA PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.645e-22 Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 2 Query: 152 NTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHN 532 + A ++K++P RSHTV+A+GG A G+ +D H +DTV G DWL DQDA++ EAPK +++LE++G P+SR DG++ R FGG + R AAD+TG LLHTL+ + + ++ Sbjct: 31 DVAIVSKVYPMRSHTVSAEGGAAAVTGD--DDSLDEHAHDTVSGGDWLCDQDAVEAFVAEAPKELVQLEHWGCPWSRKPDGRVAVRPFGGM--------KKLRTWFAADKTGFHLLHTLFQRLLTYS 147
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_MYCBO (Fumarate reductase flavoprotein subunit OS=Mycobacterium bovis GN=frdA PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.645e-22 Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 2 Query: 152 NTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKHN 532 + A ++K++P RSHTV+A+GG A G+ +D H +DTV G DWL DQDA++ EAPK +++LE++G P+SR DG++ R FGG + R AAD+TG LLHTL+ + + ++ Sbjct: 31 DVAIVSKVYPMRSHTVSAEGGAAAVTGD--DDSLDEHAHDTVSGGDWLCDQDAVEAFVAEAPKELVQLEHWGCPWSRKPDGRVAVRPFGGM--------KKLRTWFAADKTGFHLLHTLFQRLLTYS 147
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_PROVU (Fumarate reductase flavoprotein subunit OS=Proteus vulgaris GN=frdA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.874e-21 Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 2 Query: 158 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529 A I+K++P RSHTVAA+GG +A D + +H DTV G DWL +QD + Y P + +LE +G P+SR EDG + R FGG ++ R AAD+TG +LHTL+ ++K+ Sbjct: 34 ALISKVYPMRSHTVAAEGG--SAAVTQAHDSYDFHFNDTVSGGDWLCEQDVVDYFVEHCPTEMTQLELWGCPWSRKEDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLFQTSLKY 147
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_HAEIN (Fumarate reductase flavoprotein subunit OS=Haemophilus influenzae GN=frdA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.456e-20 Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 2 Query: 158 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529 A ++K++P R+HTVAA+GG A + ED + H DTV G DWL +QD ++Y + +P + +LE +G P+SR DG + R FGG ++ R AAD+TG LLHTL+ ++++ Sbjct: 34 ALVSKVYPMRTHTVAAEGGAAAVIKE--EDSYDKHFQDTVAGGDWLCEQDVVEYFVQHSPVEMTQLERWGCPWSRKADGDVNVRRFGGMKIE--------RTWFAADKTGFHLLHTLFQTSIQY 147
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_ECOLI (Fumarate reductase flavoprotein subunit OS=Escherichia coli (strain K12) GN=frdA PE=1 SV=3) HSP 1 Score: 96.2857 bits (238), Expect = 9.927e-20 Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 2 Query: 158 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMK 526 A I+K++P RSHTVAA+GG A + D + +H +DTV G DWL +QD + Y P + +LE +G P+SR DG + R FGG ++ R AAD+TG +LHTL+ +++ Sbjct: 34 ALISKVYPMRSHTVAAEGGSAAVAQD--HDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLFQTSLQ 146
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: Y033_METJA (Uncharacterized FAD-dependent oxidoreductase MJ0033 OS=Methanocaldococcus jannaschii GN=MJ0033 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15 Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 2 Query: 173 LFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTL 508 LF TV A+GG NA +D ++ H YDTVKG ++ + ++ + + APK ++ LE +G F RTEDG I QR FGGQS + R DRTGH ++ L Sbjct: 33 LFGKSGCTVMAEGGYNAVFN--PKDSFKKHFYDTVKGGGFINNPKLVEILVKNAPKELLNLERFGALFDRTEDGFIAQRPFGGQSFN--------RTCYCGDRTGHEIMRGL 134
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_HELPY (Fumarate reductase flavoprotein subunit OS=Helicobacter pylori GN=frdA PE=3 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14 Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 2 Query: 140 EHGFNTACITKLFPTRSHTVAAQGGINAALGNMTE---DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGK---------------------IYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529 + G NT ++ + RSH+ AAQGG+ A+L N + D+ H DTVKGSDW DQ + APKA+ EL ++G+P++R + G I R FGG + +R AD TGH +L+ + +A+ H Sbjct: 26 QKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHVTITERDDRHGYILSRDFGGT--------KKWRTCFTADATGHTMLYAVANEALHH 171
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: FRDA_HELPJ (Fumarate reductase flavoprotein subunit OS=Helicobacter pylori J99 GN=frdA PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.797e-14 Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 2 Query: 140 EHGFNTACITKLFPTRSHTVAAQGGINAALGNMTE---DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGK---------------------IYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529 + G NT ++ + RSH+ AAQGG+ A+L N + D+ H DTVKGSDW DQ + APKA+ EL ++G+P++R + G I R FGG + +R AD TGH +L+ + +A+ H Sbjct: 26 QKGLNTIVLSLVPVRRSHSAAAQGGMQASLANAKKSEGDNEDLHFLDTVKGSDWGCDQQVARMFVTTAPKAIRELASWGVPWTRIKKGDRPAVVNGEHVIITERDDRHGYILSRDFGGT--------KKWRTCFTADATGHTMLYAVANEALHH 171
BLAST of CX299680 vs. ExPASy Swiss-Prot
Match: DHSA_BACSU (Succinate dehydrogenase flavoprotein subunit OS=Bacillus subtilis GN=sdhA PE=3 SV=4) HSP 1 Score: 77.411 bits (189), Expect = 4.772e-14 Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 2 Query: 185 RSHTVAAQGGINAALGNMTEDDWRW-HMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDCGKGGQAYRCACAADRTGHALLHTLYGQAMKH 529 RSH+V AQGGIN A+ E D W H DTV G D+L +Q ++ MC AP + L+ G+ F+RT +G + R FGG Q +R A A TG LL+ L Q ++ Sbjct: 39 RSHSVCAQGGINGAVNTKGEGDSPWEHFDDTVYGGDFLANQPPVKAMCEAAPSIIHLLDRMGVMFNRTPEGLLDFRRFGGT--------QHHRTAYAGATTGQQLLYALDEQVRRY 146 The following BLAST results are available for this feature:
BLAST of CX299680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299680 ID=CX299680; Name=CX299680; organism=Citrus clementina; type=EST; length=535bpback to top |