CX299681

Overview
NameCX299681
Unique NameCX299681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299681_ssr7 microsatellite CX299681_ssr7:7..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP1_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana GN=SAP1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +G+TGFKCRC  TFC  HRY + H C FD+K   ++AIAKANPVVKADK+ +I
Sbjct:  116 VGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.953e-15
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:  259 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI 408
            +GLTGFKCRC  TFC  HRY+D+H C FDYKS+G++ IAK NPVV ADK+
Sbjct:  184 VGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELIAKQNPVVVADKL 233          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.038e-15
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +G+TGF+CRC   FC  HRY+++H C FD+K  G+D IAKANP+VKADK+ KI
Sbjct:  111 VGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKLEKI 163          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP5_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Oryza sativa subsp. japonica GN=SAP5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.593e-15
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:  259 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI 408
            +GLTGF CRC  TFC  HRY ++H C FD+K+AG+DAIA+ANP++K DK+
Sbjct:  101 VGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKL 150          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. japonica GN=SAP1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.593e-15
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  259 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI 408
            +GLTGF+CRC   FC  HRYSD+H C +DYKSA +DAIA+ NPVV+A KI
Sbjct:  112 VGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. indica GN=SAP1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.593e-15
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  259 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI 408
            +GLTGF+CRC   FC  HRYSD+H C +DYKSA +DAIA+ NPVV+A KI
Sbjct:  112 VGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP6_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Arabidopsis thaliana GN=SAP6 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.914e-14
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGFKCRC   FC +HRY + H C +D+KSAG++ IAKANP+VKA K+ KI
Sbjct:  118 VGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQKI 170          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP15_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 15 OS=Oryza sativa subsp. japonica GN=SAP15 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.914e-14
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF+CRC + FC  HR+S+ H C FDYK+AG++ IA+ANPV++A KI KI
Sbjct:  122 VGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVIRAAKIIKI 174          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP9_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Arabidopsis thaliana GN=SAP9 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  259 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI 408
            +G+ GFKC+C  TFC  HRY + H+C FD+K  G+  IAKANPVVKADKI
Sbjct:  124 VGIMGFKCKCGSTFCGEHRYPETHDCSFDFKEVGRGEIAKANPVVKADKI 173          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP7_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Oryza sativa subsp. japonica GN=SAP7 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  259 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI 408
            +GLTGFKCRC   FC  HR++D H C FDYKSAG++ IAK NP+V ADK+
Sbjct:  116 VGLTGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165          
The following BLAST results are available for this feature:
BLAST of CX299681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SAP1_ARATH2.261e-1562.26Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP14_ORYSJ2.953e-1568.00Zinc finger AN1 domain-containing stress-associate... [more]
SAP3_ARATH5.038e-1560.38Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP5_ORYSJ8.593e-1562.00Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSJ8.593e-1566.00Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSI8.593e-1566.00Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP6_ARATH1.914e-1462.26Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP15_ORYSJ1.914e-1460.38Zinc finger AN1 domain-containing stress-associate... [more]
SAP9_ARATH7.274e-1462.00Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP7_ORYSJ7.274e-1464.00Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionC07001A09SK NTLeaf1 Citrus clementina cDNA clone C07001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299681 ID=CX299681; Name=CX299681; organism=Citrus clementina; type=EST; length=408bp
ACGAGGGAGAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTT
GTTTTTTAATGAAATATCACTGAACGATATATAAACCAAATGTTTTGACA
TTGAGTTCCATTATGCAATAATAAAGCAACCAACTGTGCACAGACACAAA
TAAATACCGAAGCAATAGTACTAGCAGCTTATTATCATTAAAACCATAGT
CCATTCATCGAACCACCTAAAGCCCACCACATTTTACAACTCCTTGTCAG
ATCTTCTAAATCTTATCCGCCTTCACAACAGGGTTCGCTTTAGCAATGGC
ATCCTGCCCTGCACTCTTGTAATCAAACACACAGTTGTGCTTATCAGAAT
ATCGATGCAAGGAGCAAAATGTCTGCTCACACCTACATTTAAACCCCGTC
AAACCAAT
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