CX299681

Overview
NameCX299681
Unique NameCX299681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299681_ssr7 microsatellite CX299681_ssr7:7..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP4_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF CRC  TFC  HRY + H C FD+KSAG++ IAKANP+V A K+ KI
Sbjct:  109 VGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: ZFAN5_MOUSE (AN1-type zinc finger protein 5 OS=Mus musculus GN=Zfand5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF CRC   FC LHRYSDKHNC +DYK+     I K NPVV A+KI +I
Sbjct:  161 VGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: ZFAN5_HUMAN (AN1-type zinc finger protein 5 OS=Homo sapiens GN=ZFAND5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF CRC   FC LHRYSDKHNC +DYK+     I K NPVV A+KI +I
Sbjct:  161 VGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP3_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Oryza sativa subsp. japonica GN=SAP3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.158e-13
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  259 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI 408
            +GL GF CRC  T+C  HRY +KH C FD+K A +DAIA+ANP++K +K+
Sbjct:  302 VGLLGFACRCGATYCGTHRYPEKHACGFDFKGASRDAIARANPLIKGEKL 351          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: ZFAN6_RAT (AN1-type zinc finger protein 6 OS=Rattus norvegicus GN=Zfand6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF+CRC   +C +HRYSD HNC ++YK+   + I K NPVV  +KI KI
Sbjct:  171 VGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: ZFAN6_PONAB (AN1-type zinc finger protein 6 OS=Pongo abelii GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF+CRC   +C +HRYSD HNC ++YK+   + I K NPVV  +KI KI
Sbjct:  156 VGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: ZFAN6_MOUSE (AN1-type zinc finger protein 6 OS=Mus musculus GN=Zfand6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF+CRC   +C +HRYSD HNC ++YK+   + I K NPVV  +KI KI
Sbjct:  171 VGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: ZFAN6_HUMAN (AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF+CRC   +C +HRYSD HNC ++YK+   + I K NPVV  +KI KI
Sbjct:  156 VGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  250 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*KI 408
            +GLTGF+CRC   +C +HRYSD HNC ++YK+   + I K NPVV  +KI KI
Sbjct:  156 VGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP12_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica GN=SAP12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = -1
Query:  253 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI*K 408
            +GL GF+CRC  TFCS HR++DKH C FD+K + ++ IAK NP++ A KI K
Sbjct:  172 VGLLGFECRCGGTFCSTHRHADKHACTFDFKKSDREKIAKENPLIVAPKITK 223          
The following BLAST results are available for this feature:
BLAST of CX299681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SAP4_ARATH7.274e-1462.26Zinc finger A20 and AN1 domain-containing stress-a... [more]
ZFAN5_MOUSE9.501e-1462.26AN1-type zinc finger protein 5 OS=Mus musculus GN=... [more]
ZFAN5_HUMAN9.501e-1462.26AN1-type zinc finger protein 5 OS=Homo sapiens GN=... [more]
SAP3_ORYSJ6.158e-1356.00Zinc finger A20 and AN1 domain-containing stress-a... [more]
ZFAN6_RAT3.056e-1254.72AN1-type zinc finger protein 6 OS=Rattus norvegicu... [more]
ZFAN6_PONAB3.056e-1254.72AN1-type zinc finger protein 6 OS=Pongo abelii GN=... [more]
ZFAN6_MOUSE3.056e-1254.72AN1-type zinc finger protein 6 OS=Mus musculus GN=... [more]
ZFAN6_HUMAN3.056e-1254.72AN1-type zinc finger protein 6 OS=Homo sapiens GN=... [more]
ZFAN6_BOVIN3.056e-1254.72AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
SAP12_ORYSJ3.056e-1255.77Zinc finger A20 and AN1 domain-containing stress-a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07001A09SK NTLeaf1 Citrus clementina cDNA clone C07001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299681 ID=CX299681; Name=CX299681; organism=Citrus clementina; type=EST; length=408bp
ACGAGGGAGAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTT
GTTTTTTAATGAAATATCACTGAACGATATATAAACCAAATGTTTTGACA
TTGAGTTCCATTATGCAATAATAAAGCAACCAACTGTGCACAGACACAAA
TAAATACCGAAGCAATAGTACTAGCAGCTTATTATCATTAAAACCATAGT
CCATTCATCGAACCACCTAAAGCCCACCACATTTTACAACTCCTTGTCAG
ATCTTCTAAATCTTATCCGCCTTCACAACAGGGTTCGCTTTAGCAATGGC
ATCCTGCCCTGCACTCTTGTAATCAAACACACAGTTGTGCTTATCAGAAT
ATCGATGCAAGGAGCAAAATGTCTGCTCACACCTACATTTAAACCCCGTC
AAACCAAT
back to top