CX299681

Overview
NameCX299681
Unique NameCX299681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299681_ssr7 microsatellite CX299681_ssr7:7..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP10_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = -1 
Query:  259 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI 408
            +G+ GFKCRC   FC  HRY ++H+C FDYK +G+ A+A   P+++ADK+
Sbjct:   78 VGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKL 127
[Close]
BLAST of CX299681 vs. ExPASy Swiss-Prot
Match: SAP8_ARATH (Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana GN=SAP8 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = -1 
Query:  259 IGLTGFKCRCEQTFCSLHRYSDKHNCVFDYKSAGQDAIAKANPVVKADKI 408
            +GL GF CRC   F + HRY ++H+C  DYKSA  D +AK NPVVK DK+
Sbjct:   73 VGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVKGDKL 122
The following BLAST results are available for this feature:
BLAST of CX299681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SAP10_ARATH4.413e-1150.00Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ARATH5.764e-1156.00Putative zinc finger A20 and AN1 domain-containing... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07001A09SK NTLeaf1 Citrus clementina cDNA clone C07001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299681 ID=CX299681; Name=CX299681; organism=Citrus clementina; type=EST; length=408bp
ACGAGGGAGAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTT
GTTTTTTAATGAAATATCACTGAACGATATATAAACCAAATGTTTTGACA
TTGAGTTCCATTATGCAATAATAAAGCAACCAACTGTGCACAGACACAAA
TAAATACCGAAGCAATAGTACTAGCAGCTTATTATCATTAAAACCATAGT
CCATTCATCGAACCACCTAAAGCCCACCACATTTTACAACTCCTTGTCAG
ATCTTCTAAATCTTATCCGCCTTCACAACAGGGTTCGCTTTAGCAATGGC
ATCCTGCCCTGCACTCTTGTAATCAAACACACAGTTGTGCTTATCAGAAT
ATCGATGCAAGGAGCAAAATGTCTGCTCACACCTACATTTAAACCCCGTC
AAACCAAT
back to top