CX299683

Overview
NameCX299683
Unique NameCX299683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: EA87_VICFA (Embryonic abundant protein USP87 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.987e-18
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 3
Query:   30 DKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 284
            D +V+CH+ N+   VF CH  + T AY+V L  +DGTK KA  VCH DT   NP+ L ++ L+V  GTVP+CHF+      WVPN
Sbjct:  176 DNAVMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKALTVCHHDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWVPN 259          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.095e-18
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 3
Query:   39 VVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 284
            V CH   Y YAVF CH T T  AY V L GADGTKA+A A CHTD +    +  A++ L V PG+VP+CHFLP+D ++WV N
Sbjct:  161 VACHGMAYAYAVFGCHTT-TAAAYTVTLAGADGTKAEALAACHTDAAPRVAE--AYKRLGVAPGSVPVCHFLPQDDMLWVRN 239          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURPB_ORYSJ (BURP domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=BURP11 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.691e-18
Identity = 46/98 (46.94%), Postives = 53/98 (54.08%), Query Frame = 3
Query:   39 VVCHKQNYPYAVFYCHATQTTRAYMVPL------------EGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPNKKTG 296
            V CH   YPYAVFYCH+T+ T AY V L            E A   K +A AVCH DTS W   +  F    VKPG V +CHFL +  IVWVP  + G
Sbjct:  225 VACHDLTYPYAVFYCHSTKPTAAYAVTLVAATTGDGDGEGEAASPAKMEALAVCHLDTSRWRADNPFFVAHGVKPGEVSVCHFLTKLSIVWVPRHEQG 322          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURPA_ORYSJ (BURP domain-containing protein 10 OS=Oryza sativa subsp. japonica GN=BURP10 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 3
Query:   36 SVVCHKQNYPYAVFYCHATQTTRAYMVPLEGAD-------GT--KAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 281
            +V CH   +P+AVFYCHA   TR Y V LE  +       GT  K +A AVCH DTS ++PK   F    ++PG   +CHF+  D ++W P
Sbjct:  244 TVTCHTMRFPFAVFYCHAINPTRVYAVVLESEEDGSGSGSGTPEKMEALAVCHLDTSRFDPKTPLFVEHNLRPGDASVCHFVSRDSVIWAP 334          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.418e-14
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 3
Query:   33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            +SV CH+  +PY V+YCH+    R Y   +  AD  +      A+CH DTS W+P H AF  L  KPG V +CH++ E  + W
Sbjct:  541 RSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKINHGVAICHLDTSDWSPTHGAFIALGGKPGEVEVCHWIFEGDMTW 623          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 3
Query:   33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            K+V CH+  YPY ++YCH+    R Y   L   +  K      A+CH DTS+W P H AF  L  KPG + +CH++ E+ + W
Sbjct:  540 KAVSCHQSLYPYLLYYCHSVPKVRVYEADLLELNSKKKINHGIAICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNW 622          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURP9_ORYSJ (BURP domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=BURP9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 34/84 (40.48%), Postives = 43/84 (51.19%), Query Frame = 3
Query:   39 VVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKA---AAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 281
            + CH   YPY VF+CH  + TR Y V L   +  +       AVCH +TS W+  H  F  + VKPG    CHF     I+WVP
Sbjct:  423 LACHDMLYPYKVFFCHTPKQTRLYQVSLVSGESGRPLIDGLLAVCHQNTSDWDTGHPFFHFMDVKPGETTACHFFGRGSIIWVP 506          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURP8_ORYSJ (BURP domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=BURP8 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 3
Query:   39 VVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPN 284
            V CH   Y YAVF CH T  T AY V L GADGT+A+A A CH D  A+     A++ + V  G+VP+CH +P   ++WV N
Sbjct:  236 VTCHGMPYAYAVFGCHTTTAT-AYAVTLAGADGTRAEALATCHGD--AFPGVAEAYERVGVAAGSVPVCHIMPLGDMLWVRN 314          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURP2_ORYSJ (BURP domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=BURP2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.893e-13
Identity = 39/83 (46.99%), Postives = 48/83 (57.83%), Query Frame = 3
Query:   39 VVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKAAAVCHTDTSAWNPKHL-AFQVLKVKPGTVPICHFLPEDHIVWVPN 284
            V CH+  Y YAVF  H  +   AY V L GADGT A+A A CH D          A++ L V PG V +CHFLP+D ++WV N
Sbjct:  206 VACHRMPYAYAVFGVHGIKGA-AYTVTLAGADGTMAEAVAACHGDVDGHGVAVAEAYKRLGVAPGKVAVCHFLPQDDMLWVRN 287          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 3
Query:   33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            KSV CH+  YPY ++YCH+    R Y   L     +KAK     A+CH DTSAW   H AF +L  +PG + +CH++ E+ + W
Sbjct:  536 KSVSCHQSLYPYLLYYCHSVPKVRVYESDLLDPK-SKAKINHGIAICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNW 618          
The following BLAST results are available for this feature:
BLAST of CX299683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EA87_VICFA2.987e-1848.24Embryonic abundant protein USP87 OS=Vicia faba PE=... [more]
BURP6_ORYSJ5.095e-1854.88BURP domain-containing protein 6 OS=Oryza sativa s... [more]
BURPB_ORYSJ8.691e-1846.94BURP domain-containing protein 11 OS=Oryza sativa ... [more]
BURPA_ORYSJ1.062e-1542.86BURP domain-containing protein 10 OS=Oryza sativa ... [more]
BURPC_ORYSJ3.418e-1440.96BURP domain-containing protein 12 OS=Oryza sativa ... [more]
JP650_ARATH9.944e-1439.76Probable polygalacturonase non-catalytic subunit J... [more]
BURP9_ORYSJ2.215e-1340.48BURP domain-containing protein 9 OS=Oryza sativa s... [more]
BURP8_ORYSJ2.215e-1347.56BURP domain-containing protein 8 OS=Oryza sativa s... [more]
BURP2_ORYSJ2.893e-1346.99BURP domain-containing protein 2 OS=Oryza sativa s... [more]
JP630_ARATH3.779e-1341.67Probable polygalacturonase non-catalytic subunit J... [more]

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Properties
Property NameValue
Genbank descriptionC07001A11SK NTLeaf1 Citrus clementina cDNA clone C07001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299683 ID=CX299683; Name=CX299683; organism=Citrus clementina; type=EST; length=591bp
GAATTCGGCACGAGGAGCAGATGGCAGCTGACAAATCAGTAGTGTGCCAT
AAGCAGAACTATCCATATGCTGTATTCTACTGCCATGCAACACAAACCAC
AAGGGCTTACATGGTTCCCTTGGAAGGTGCTGATGGGACAAAAGCCAAAG
CAGCAGCAGTCTGCCACACAGATACATCAGCATGGAACCCCAAGCATTTA
GCTTTTCAAGTGCTCAAAGTTAAGCCAGGAACTGTTCCTATATGTCACTT
CCTTCCTGAGGATCACATTGTCTGGGTTCCCAATAAGAAGACTGGAGAAT
AGAATTTGATCCTCTTATCCCATCTACTTAATCAGCAGAGTTTGAATCAG
TCAGTTCAAGCAGTTATCCATTTAGTTGTACAATAATTTACTTTGAATAC
CCAGTTCAATTTGTTATGCATACATTAAGCTTGCTGTACTTCAAAACTTG
TGTGCCTAGTATTTATCTTATCTACTTATGGAGCTATCTTCAGTCTTACT
TTGCGGCTGGCTGGTGAATCTATTAGAAATCCCTGTGATCACATGAATCA
AATAAATATGATCATCCCATGAACAAAAAAAAAAAAAAAAA
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