CX299683

Overview
NameCX299683
Unique NameCX299683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 3
Query:   33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            KSV CH+  YPY ++YCH+    R Y   +   + +K K     A+CH DTS+W P H AF  L   PG + +CH++ E+ + W
Sbjct:  544 KSVSCHQTLYPYLLYYCHSVPKVRVYEADILDPN-SKVKINHGVAICHVDTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTW 626          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 3
Query:   33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            ++V CH+  YPY ++YCH+    R Y   L      +      A+CH DTSAW+P H AF  L   PG + +CH++ E+ + W
Sbjct:  538 RAVSCHQSLYPYLLYYCHSVPRVRVYETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTW 620          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.418e-13
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 3
Query:   33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            KSV CH+  YP  ++YCH+    R Y   +   + +KAK     A+CH DTS+W P+H AF  L   PG + +CH++ E+ + W
Sbjct:  546 KSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPN-SKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTW 628          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 3
Query:   33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275
            KSV CH+  YP  ++YCH+    R Y   +   + +KAK     A+CH DTS+W P+H AF  L   PG + +CH++ E+ + W
Sbjct:  543 KSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPN-SKAKINHGVAICHVDTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTW 625          
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12
Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 3
Query:   36 SVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWV 278
            SV CH+  +PY V+YCH+    R Y   +     TK K     A+CH DTSAWN  H AF  L  KPG   +CH++    + WV
Sbjct:  257 SVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQ-TKEKINSGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWV 339          
The following BLAST results are available for this feature:
BLAST of CX299683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GP1_SOLLC3.779e-1339.29Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
Y639_ARATH6.446e-1337.35Probable polygalacturonase non-catalytic subunit A... [more]
GP3_SOLLC8.418e-1339.29Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC1.099e-1239.29Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
BURPG_ORYSJ2.449e-1241.67BURP domain-containing protein 16 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC07001A11SK NTLeaf1 Citrus clementina cDNA clone C07001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299683 ID=CX299683; Name=CX299683; organism=Citrus clementina; type=EST; length=591bp
GAATTCGGCACGAGGAGCAGATGGCAGCTGACAAATCAGTAGTGTGCCAT
AAGCAGAACTATCCATATGCTGTATTCTACTGCCATGCAACACAAACCAC
AAGGGCTTACATGGTTCCCTTGGAAGGTGCTGATGGGACAAAAGCCAAAG
CAGCAGCAGTCTGCCACACAGATACATCAGCATGGAACCCCAAGCATTTA
GCTTTTCAAGTGCTCAAAGTTAAGCCAGGAACTGTTCCTATATGTCACTT
CCTTCCTGAGGATCACATTGTCTGGGTTCCCAATAAGAAGACTGGAGAAT
AGAATTTGATCCTCTTATCCCATCTACTTAATCAGCAGAGTTTGAATCAG
TCAGTTCAAGCAGTTATCCATTTAGTTGTACAATAATTTACTTTGAATAC
CCAGTTCAATTTGTTATGCATACATTAAGCTTGCTGTACTTCAAAACTTG
TGTGCCTAGTATTTATCTTATCTACTTATGGAGCTATCTTCAGTCTTACT
TTGCGGCTGGCTGGTGAATCTATTAGAAATCCCTGTGATCACATGAATCA
AATAAATATGATCATCCCATGAACAAAAAAAAAAAAAAAAA
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