CX299683
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13 Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 3 Query: 33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275 KSV CH+ YPY ++YCH+ R Y + + +K K A+CH DTS+W P H AF L PG + +CH++ E+ + W Sbjct: 544 KSVSCHQTLYPYLLYYCHSVPKVRVYEADILDPN-SKVKINHGVAICHVDTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTW 626
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13 Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 3 Query: 33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275 ++V CH+ YPY ++YCH+ R Y L + A+CH DTSAW+P H AF L PG + +CH++ E+ + W Sbjct: 538 RAVSCHQSLYPYLLYYCHSVPRVRVYETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTW 620
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 8.418e-13 Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 3 Query: 33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275 KSV CH+ YP ++YCH+ R Y + + +KAK A+CH DTS+W P+H AF L PG + +CH++ E+ + W Sbjct: 546 KSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPN-SKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTW 628
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12 Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 3 Query: 33 KSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 275 KSV CH+ YP ++YCH+ R Y + + +KAK A+CH DTS+W P+H AF L PG + +CH++ E+ + W Sbjct: 543 KSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPN-SKAKINHGVAICHVDTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTW 625
BLAST of CX299683 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12 Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 3 Query: 36 SVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWV 278 SV CH+ +PY V+YCH+ R Y + TK K A+CH DTSAWN H AF L KPG +CH++ + WV Sbjct: 257 SVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQ-TKEKINSGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWV 339 The following BLAST results are available for this feature:
BLAST of CX299683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX299683 ID=CX299683; Name=CX299683; organism=Citrus clementina; type=EST; length=591bpback to top |