CX299689

Overview
NameCX299689
Unique NameCX299689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.011e-13
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = -1
Query:  254 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRV 412
            ARTT D++ AC CLK+    + G+  N AAGLP++CGV IPYKI+P+TDC RV
Sbjct:   67 ARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.011e-13
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKI+ ST+C  V+
Sbjct:   64 ANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKI+ +T+C  V+
Sbjct:   64 ANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKI+PST+C  V+
Sbjct:   64 AKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = -1
Query:  254 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRV 412
            ARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY I+ STDC RV
Sbjct:   69 ARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKI+PSTDC  V+
Sbjct:   67 AQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  263 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDC 412
            +RTT DR+A C+CLK A G +RGI PN A  LP +CGV IPYKI+ ST+C
Sbjct:   38 SRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNC 87          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            ARTT DR+AACNCLK + G+I G+KP   A LP +CGVR+PY I+ ST+C  +R
Sbjct:   64 ARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKI+PSTDC  V+
Sbjct:   63 AQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = -1
Query:  263 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDC 412
            A TTPDR+ ACNCLK A   I+GI    AAGLP  CGV IPY I+PST+C
Sbjct:   64 AATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNC 113          
The following BLAST results are available for this feature:
BLAST of CX299689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NLTP_DAUCA8.011e-1358.49Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP6_LENCU8.011e-1362.96Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU1.046e-1261.11Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP_PRUAV1.366e-1255.56Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP2_SORBI1.366e-1264.15Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP2_GOSHI1.366e-1261.11Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_PHAAU1.366e-1262.00Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP1_LENCU1.366e-1259.26Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP1_GOSHI1.366e-1261.11Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_SPIOL1.785e-1264.00Non-specific lipid-transfer protein OS=Spinacia ol... [more]

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Properties
Property NameValue
Genbank descriptionC07001B10SK NTLeaf1 Citrus clementina cDNA clone C07001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299689 ID=CX299689; Name=CX299689; organism=Citrus clementina; type=EST; length=412bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGGCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGGTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGC
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