CX299689

Overview
NameCX299689
Unique NameCX299689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TT DRQ AC CLK A  +  G+    AA LPS C V IPYKI+PSTDC +V+
Sbjct:   61 AQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 29/54 (53.70%), Postives = 35/54 (64.81%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TTPDRQ ACNCLK       G+   + AG+P +CGV IPY I   TDC +VR
Sbjct:   60 AKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = -1
Query:  254 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRV 412
            A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKI+PST+C +V
Sbjct:   38 ATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPN--VAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TT DRQ+ CNCLK+A   I     N  +AAGLP +CGV IPYKI+PSTDC  ++
Sbjct:   68 AQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            A+TTPDRQ AC C++    +I G+ P++A+GLP +CGV IPY I+ ST+C  ++
Sbjct:   62 AKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = -1
Query:  254 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRV 412
            A TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY I+PS DC  V
Sbjct:   65 ASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = -1
Query:  254 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRV 412
            A TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY I+PS DC  V
Sbjct:   64 ATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = -1
Query:  254 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRV 412
            A TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY I+PS DC  V
Sbjct:   65 ASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = -1
Query:  251 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRVR 412
            AR   DRQAAC C+K     I  I   VAAGLP QC V IPYKI+PS DC RV+
Sbjct:   67 ARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CX299689 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  254 ARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKITPSTDCFRV 412
            A TT DR+ AC CL  A  +I G+   +AAGLP +CGV IPYKI+PST+C +V
Sbjct:   38 AATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
The following BLAST results are available for this feature:
BLAST of CX299689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NLTP2_SOLPN3.366e-1157.41Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
SCA_LILLO4.396e-1153.70Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP3_VITSX4.396e-1158.49Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP3_PRUDU4.396e-1157.14Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP3_ARATH4.396e-1150.00Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP2_ORYSI4.396e-1156.60Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ4.396e-1156.60Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ4.396e-1156.60Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP6_GOSHI7.498e-1159.26Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP5_VITSX9.792e-1156.60Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]

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Properties
Property NameValue
Genbank descriptionC07001B10SK NTLeaf1 Citrus clementina cDNA clone C07001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299689 ID=CX299689; Name=CX299689; organism=Citrus clementina; type=EST; length=412bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGGCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGGTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGC
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