CX299695

Overview
NameCX299695
Unique NameCX299695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.925e-17
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPSVN----TGQAFALEFLITFNLLFXXXXXXXXXXXX--GELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLV 507
            GL++  ++   GHISG H+NP++T+A    R                        L  V  P + GG+ V +V+     G    +E +ITF L+F              G +A +A+G +V +  L A   +GASMNP R+ GPAV  GN+++ WIY V P +GA+   A+Y  V
Sbjct:   78 GLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 251          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.925e-17
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPSVN----TGQAFALEFLITFNLLFXXXXXXXXXXXX--GELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLV 507
            GL++  ++   GHISG H+NP++T+A    R                        L  V  P + GG+ V +V+     G    +E +ITF L+F              G +A +A+G +V +  L A   +GASMNP R+ GPAV  GN+++ WIY V P +GA+   A+Y  V
Sbjct:   81 GLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 254          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.432e-17
Identity = 57/181 (31.49%), Postives = 81/181 (44.75%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPS-----VNTGQAFALEFLITFNLLFXXXXXXXXXXXX--GELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLVKLRGD 522
            G  + + +    +ISG H+NP++T   A                          A+ G        GV  P+     V   +   +E ++TF L++              G +A IA+G  V  NILVAGP SG SMNP R+ GPAVA+G+Y ++WIY V P +G      VY  V + GD
Sbjct:   65 GFGLFVAVAIGANISGGHVNPAVTFGLAL------GGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHGLSGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGDYTNIWIYWVGPLVGGGLAGLVYRYVYMCGD 239          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.432e-17
Identity = 57/175 (32.57%), Postives = 84/175 (48.00%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPSVN----TGQAFALEFLITFNLLFXXXXXXXXXXXX--GELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLV 507
            GL++  ++   GHISG H+NP++T+A    R                        L  V  P + GG+ V +V+     G    +E +ITF L+F              G +A +A+G +V +  L A   +GASMNP R+ GPAV  GN+ + WIY V P +GA+   A+Y  V
Sbjct:   78 GLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWANHWIYWVGPIMGAVLAGALYEYV 251          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 6.432e-17
Identity = 56/175 (32.00%), Postives = 84/175 (48.00%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPSVN----TGQAFALEFLITFNLLFXXXXXXXXXXXX--GELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLV 507
            GL++  ++   GHISG H+NP++T+A    R                        L  V  P + GG+ V +V+     G    +E +ITF L+F              G +A +A+G +V +  L A   +GASMNP R+ GPAV  GN+++ WIY V P +GA+    +Y  V
Sbjct:   78 GLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.097e-16
Identity = 56/175 (32.00%), Postives = 84/175 (48.00%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPSVN----TGQAFALEFLITFNLLFXXXXXXXXXXXX--GELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLV 507
            GL++  ++   GHISG H+NP++T+A    R                        L  V  P + GG+ V +V+     G    +E +ITF L+F              G +A +A+G +V +  L A   +GASMNP R+ GPAV  GN+++ WIY V P +GA+    +Y  V
Sbjct:   78 GLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.433e-16
Identity = 54/166 (32.53%), Postives = 75/166 (45.18%), Query Frame = 1
Query:    7 AVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFXXXXXXXXXXXX--GELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVY 498
            A+ + +    +ISG HLNP++T   A   H                     F L+ V H        V  ++  +   +E +ITF L++              G +A +A+G  V  NIL AGP SG SMNP R+ GPAVAAGN+   W+Y V P +G      VY
Sbjct:   66 ALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHGQAIPTHGVSGISEIEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLVGGGLAGLVY 231          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.871e-16
Identity = 56/175 (32.00%), Postives = 83/175 (47.43%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPSVN----TGQAFALEFLITFNLLFXXXXXXXXXXXX--GELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLV 507
            GL++  ++   GHISG H+NP++T+A    R                        L  V  P + GG+ V  V+     G    +E +ITF L+F              G +A +A+G +V +  L A   +GASMNP R+ GPAV  GN+++ WIY V P +GA+    +Y  V
Sbjct:   78 GLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.192e-16
Identity = 60/186 (32.26%), Postives = 83/186 (44.62%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTV----PSVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGE-LAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLV-KLR-GDDSTET 537
            GL V  +    GH+SG H+NP++T+ F  +                         +K        G + V    PS+N  QA  +E LITF L+F             +  A +AVG  +    L A   SGASMNP R+ GPAV  G +   W+Y V P  G L    +Y L+ K+R GDD T++
Sbjct:   57 GLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIVQCVGAIAGAAVIKVALDGVAGGDLGVSSFDPSLNCAQAVLIEALITFILVFVVKAVSDPGRQDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQGVWTYHWVYWVGPIAGGLLAGIIYRLIFKVRKGDDETDS 242          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.213e-15
Identity = 55/172 (31.98%), Postives = 77/172 (44.77%), Query Frame = 1
Query:   10 VMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVP------SVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGELAG---IAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVY 498
            V+ V++S GHISG HLNP++T+      H                     F L      +++GG+  P       V+  Q    E ++TF+LLF            G L G   +  G  V  NIL  G  SGASMNP R+ GPA+ +GN+   W+Y V P +G      +Y
Sbjct:   63 VVAVMISAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLS-----YLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKK-GSLDGFGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIY 228          
The following BLAST results are available for this feature:
BLAST of CX299695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
AQP4_RAT4.925e-1732.57Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL4.925e-1732.57Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
TIP22_ORYSJ6.432e-1731.49Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
AQP4_MOUSE6.432e-1732.57Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_BOVIN6.432e-1732.00Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP4_DIPME1.097e-1632.00Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
TIP23_MAIZE1.433e-1632.53Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
AQP4_HUMAN1.871e-1632.00Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP_DROME3.192e-1632.26Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
TIP41_ARATH1.213e-1531.98Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]

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Properties
Property NameValue
Genbank descriptionC07001C05SK NTLeaf1 Citrus clementina cDNA clone C07001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299695 ID=CX299695; Name=CX299695; organism=Citrus clementina; type=EST; length=552bp
GGGCTGGCCGTTATGATCGTGATTCTGTCAACAGGCCATATTTCTGGAGC
ACATCTTAATCCGTCGCTCACCATCGCATTTGCAGCACTTCGTCACTTTC
CGTGGGTTCAAGTGCCGGCCTATGTTGCAGCGCAGGTTTCAGCATCCGTT
TGTGCTTCTTTTGCTCTCAAGGGTGTTTTTCATCCTTTCATGTCTGGTGG
CGTTACTGTTCCTTCCGTAAACACTGGCCAGGCTTTTGCTCTCGAATTCC
TCATCACATTCAATCTCCTTTTTGTTGTCACTGCTGTTGCTACCGACACC
CGCGCGGTGGGAGAGTTGGCGGGCATTGCAGTTGGAGCTACAGTCATGCT
CAATATTCTAGTGGCGGGGCCATCAAGTGGTGCTTCCATGAATCCAGTAA
GAACTTTGGGACCAGCCGTTGCAGCAGGAAATTACAAGTCATTGTGGATA
TACTTAGTGGCTCCAACTCTGGGGGCTCTTGCAGGGGCAGCTGTTTATAC
GCTCGTCAAACTTCGAGGGGATGATAGTACTGAGACACCACGCCAGGTTA
GG
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