CX299695

Overview
NameCX299695
Unique NameCX299695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.770e-12
Identity = 47/167 (28.14%), Postives = 69/167 (41.32%), Query Frame = 1
Query:    7 AVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTV-PSVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGE--LAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVY 498
            A+   + ++ H+SG H+NP+++                               L+ V +     G  V P V  G  F LE ++TF L++                +A +A+G  V  NILV GP  GA MNP    GP++    +   WI+ V P LGA   A VY
Sbjct:   68 ALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQWHQHWIFWVGPLLGAALAALVY 234          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.770e-12
Identity = 45/170 (26.47%), Postives = 73/170 (42.94%), Query Frame = 1
Query:    4 LAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPS-VNTGQAFALEFLITFNLLFXXXXXXXXXXXXG-ELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLV 507
            LA+   +  + + SG H+NP++T      R   +                    L+         G T+   ++   A  LE ++TF L++            G ++A +A+G     NIL  GP  GA+MNP R  GPA+   N++  W+Y + P +GA    A+Y  V
Sbjct:   74 LALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWLGPLIGAGMAGALYEFV 243          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.770e-12
Identity = 54/176 (30.68%), Postives = 77/176 (43.75%), Query Frame = 1
Query:    4 LAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMS--GGV----TVPSVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYK-SLW----IYLVAPTLGALAGAAVY 498
            LA+  VI S G ISGAH+NP++TIA  ++  FP                           P  +  GG+      P +  GQA   E + TF L+                AG+ +G TV   I   G  +G+S+NP RT GP +       +LW    IY++ P +GA+A A +Y
Sbjct:   65 LAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLY 240          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 49/172 (28.49%), Postives = 75/172 (43.60%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTV----PSVNTGQAFALEFLIT--FNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVY 498
            GLA+  ++ + GHISGAH+NP++T AF                            L  V    + G + +    P V+ GQA  +E  +T  F L              G +A +AVG ++ L  L     +GA MNP R+  PA+   N+ + W+Y V P +G    + +Y
Sbjct:   49 GLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLASLLY 219          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 48/172 (27.91%), Postives = 72/172 (41.86%), Query Frame = 1
Query:    4 LAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGV----FHPFMSGGVTVPSVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLV 507
            LA    +  +   SGAH NP++T+A+    H                       L GV        +   V   S +TGQA A+E ++T  L+             G  A + +G +V L  L+    +G SMNP R+ GPAV  G +   WI+ V P  GA+  + +Y  +
Sbjct:   61 LATATAVQISWKTSGAHANPAVTLAYLVGSHISLPRAVAYIAAQLAGATVGAALLYGVTPGGVRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDSRQTLGSPAAM-IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAVHWIFWVGPLTGAVLASLIYNFI 231          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 52/188 (27.66%), Postives = 77/188 (40.96%), Query Frame = 1
Query:    7 AVMIVILSTG--HISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVP------SVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGE------LAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLVKLRGDDS 528
            A+++ +L+T   H+SG HLNP++T++ A   H                       L+      ++GG   P       V   Q  A E + TF LL                     L G+ VGA    N +  G  +GASMNP R+ GPA+A G +   W+Y V P  G       Y L+ +  +D+
Sbjct:   68 ALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLR-----CLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGA----NTVAGGALTGASMNPARSFGPALATGEWAHHWVYWVGPLAGGPLAVVAYELLFMDVEDA 246          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 48/172 (27.91%), Postives = 76/172 (44.19%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPSVNTG----QAFALEFLIT--FNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVY 498
            GLA+  ++ + GHISGAH+NP++T  F                            L  V  P + G + + +++ G    QA  +E  +T  F L              G +A +AVG ++ L  L     +GA MNP R+  PA+   N+ + W+Y V P +G   G+ +Y
Sbjct:   49 GLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLY 219          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 49/184 (26.63%), Postives = 76/184 (41.30%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGV----TVPSVNTGQAFALEFLITFNL-LFXXXXXXXXXXXXGELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVYTLVKL-RGDDSTE 534
            GL++  +  S GHISGAHLNP++T+                              L G+    +   +        VN+GQ   +E + T  L L             G  A +A+G +V L  L+A   +G  +NP R+ G AV   N+ + WI+ V P +G+     +Y  +   R  D T+
Sbjct:   57 GLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLENSLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRNFSNHWIFWVGPFIGSALAVLIYDFILAPRSSDFTD 240          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 51/173 (29.48%), Postives = 76/173 (43.93%), Query Frame = 1
Query:    7 AVMIVILSTGHISGAHLNPSLTIA------FAALRH-FPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFXXXXXXXXXXXX--GELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVY 498
            A+   + +  ++SG H+NP++T          A+R  + W                    ++ V     SG   V +VN      LE ++TF L++              G +A +A+G  V  NILV GP SGASMNP R  GPA+    +   WIY V P +G+   A +Y
Sbjct:   76 ALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASG---VGAVN---GLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWRWHDHWIYWVGPFIGSALAALIY 242          
BLAST of CX299695 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 43/171 (25.15%), Postives = 77/171 (45.03%), Query Frame = 1
Query:    1 GLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWXXXXXXXXXXXXXXXXXXFALKGVFHPFMSGGVTVPSVNT----GQAFALEFLITFNLLFXXXXXXXXXXXXG-ELAGIAVGATVMLNILVAGPSSGASMNPVRTLGPAVAAGNYKSLWIYLVAPTLGALAGAAVY 498
            GL +  ++ + GH+SGAH+NP++T+A     H  +                    L  +    + G + V +++     GQA  +E  +T  L+                   +++G +V L  L+    +G SMNP R+L PAV  G +   W++ + P +GA+ G+ +Y
Sbjct:   49 GLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGSPALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGKFDDHWVFWIGPLVGAVIGSLLY 219          
The following BLAST results are available for this feature:
BLAST of CX299695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
TIPA_PHAVU4.770e-1228.14Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP32_ORYSJ4.770e-1226.47Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
AQPM_ARCFU4.770e-1230.68Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
MIP_RABIT8.137e-1228.49Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQP6_RAT8.137e-1227.91Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
TIP42_ORYSJ1.063e-1127.66Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
MIP_CAVPO1.063e-1127.91Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQP1_RAT1.063e-1126.63Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
TIP31_ARATH1.388e-1129.48Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
AQP2_MOUSE1.388e-1125.15Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07001C05SK NTLeaf1 Citrus clementina cDNA clone C07001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299695 ID=CX299695; Name=CX299695; organism=Citrus clementina; type=EST; length=552bp
GGGCTGGCCGTTATGATCGTGATTCTGTCAACAGGCCATATTTCTGGAGC
ACATCTTAATCCGTCGCTCACCATCGCATTTGCAGCACTTCGTCACTTTC
CGTGGGTTCAAGTGCCGGCCTATGTTGCAGCGCAGGTTTCAGCATCCGTT
TGTGCTTCTTTTGCTCTCAAGGGTGTTTTTCATCCTTTCATGTCTGGTGG
CGTTACTGTTCCTTCCGTAAACACTGGCCAGGCTTTTGCTCTCGAATTCC
TCATCACATTCAATCTCCTTTTTGTTGTCACTGCTGTTGCTACCGACACC
CGCGCGGTGGGAGAGTTGGCGGGCATTGCAGTTGGAGCTACAGTCATGCT
CAATATTCTAGTGGCGGGGCCATCAAGTGGTGCTTCCATGAATCCAGTAA
GAACTTTGGGACCAGCCGTTGCAGCAGGAAATTACAAGTCATTGTGGATA
TACTTAGTGGCTCCAACTCTGGGGGCTCTTGCAGGGGCAGCTGTTTATAC
GCTCGTCAAACTTCGAGGGGATGATAGTACTGAGACACCACGCCAGGTTA
GG
back to top