CX299725

Overview
NameCX299725
Unique NameCX299725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_HAMD5 (50S ribosomal protein L18 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  180 KREDRTARHSRIRKKID--GTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            K+  R  R +R R+KI   GT    RL + R+++H+Y Q+I  T    L +AS+++K I++E  YS     E A  VG++IA+  L+KGI KV+FDR G+ YHGR+QALAD ARE GL F
Sbjct:    3 KKLARIRRATRTRQKIKELGTT---RLVINRTSRHIYAQIISPTGSEVLVAASSVEKVINQEFKYSGNK--EAAAFVGKIIAERALKKGIIKVSFDRSGFQYHGRVQALADNAREAGLNF 117          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_SHEPA (50S ribosomal protein L18 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  180 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            K+  R  R  R RKKI       RL V R+ +H Y QVI    +  LA+AST +K ++E+L Y+    ++ AK VG+ +A+  +EKG+  VAFDR G+ YHGR+ ALADAARE GL+F
Sbjct:    3 KKTSRLRRALRARKKIQELGVN-RLVVHRTPRHTYAQVISPENV-VLAAASTAEKAVTEQLKYTGN--VDAAKVVGKTVAERAIEKGVAVVAFDRSGFKYHGRVAALADAAREAGLKF 116          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_SHEHH (50S ribosomal protein L18 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  180 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            K+  R  R  R RKKI       RL V R+ +H Y QVI    +  LA+AST +K ++E+L Y+    ++ AK VG+ +A+  +EKG+  VAFDR G+ YHGR+ ALADAARE GL+F
Sbjct:    3 KKTSRLRRALRARKKIQELGVN-RLVVHRTPRHTYAQVISPENV-VLAAASTAEKAVTEQLKYTGN--VDAAKVVGKTVAERAIEKGVAVVAFDRSGFKYHGRVAALADAAREAGLKF 116          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_RHOBA (50S ribosomal protein L18 OS=Rhodopirellula baltica GN=rplR PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  192 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            R  R   +R K+ G+ ++PRLC+ R+ KH   QV+DD    TL SAST  K + +++   +G   + A  VG+++A+   E G+  V  DRG   YHGR++A ADAARE GLQF
Sbjct:   11 RLRRRRHVRNKLRGSADQPRLCIQRTLKHFACQVVDDQAGKTLLSASTRDKTVRDQV--KAGGNCDAAALVGKLVAEKAAEAGVKTVKLDRGHNKYHGRVKAFADAAREAGLQF 122          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_PSEE4 (50S ribosomal protein L18 OS=Pseudomonas entomophila (strain L48) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  180 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            K+  R  R  + R K+    E  RLCVFRS++H+Y QVI       LASAST+ K    EL   +   I+ A KVG+++A+     G+++VAFDR G+ YHGR++ALADAARE GL+F
Sbjct:    4 KKVTRLRRARKARLKMHEL-EAVRLCVFRSSQHIYAQVISADGSKVLASASTLDK----ELRDGATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLEF 116          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_ORITB (50S ribosomal protein L18 OS=Orientia tsutsugamushi (strain Boryong) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 3
Query:  174 RTKREDRTARHSRIRKKIDGTPER--PRLCVFRSNKHLYVQVIDD---TKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 518
            R  ++    R +R+R KI        PRL VF+SN+H+Y QVI++    K +T+A+AST+ K I  E  Y     I+ AKKVG+++A+    KGIT V FDRGGY YHG I+ALAD ARE
Sbjct:    2 RDSKDRFIIRKNRVRAKIAKLSGGCYPRLSVFKSNRHIYAQVIENIGSNKSNTIAAASTLDKDIFTESKYYKC-NIQYAKKVGQLLAERANSKGITSVVFDRGGYKYHGVIKALADGARE 120          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_DEIRA (50S ribosomal protein L18 OS=Deinococcus radiodurans GN=rplR PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  162 STRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            +T    +R+ RT R  R      G   R RL V+RS+KH+Y Q+IDD++  TLA+AS+            SG   + A  VG+ +A +  EKGI +V FDRG Y YHGR++ALADAARE GL F
Sbjct:    2 ATATTIRRKLRTRRKVRTTTAASG---RLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--------LKSGNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGGLDF 114          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_CHLCH (50S ribosomal protein L18 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 3
Query:  189 DRTARHSRIRKK----IDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            D+ AR  +I+ +    + GT  +PRLC++RS   +Y Q+IDD    TL +ASTM K          G   + ++ VG+ IA+  L  GIT V FDR G+ YHGR++ALAD ARE GL F
Sbjct:    5 DKAARRQKIKDRSRVSVQGTASKPRLCIYRSLAEMYAQLIDDVNGKTLVTASTMTKNNKA----FEGTKSDASRIVGQQIAEKALAAGITNVVFDRNGFRYHGRVKALADGAREAGLIF 119          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_SPHAL (50S ribosomal protein L18 OS=Sphingopyxis alaskensis GN=rplR PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 55/120 (45.83%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  177 TKREDRTAR-HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            T+ E R  R  + +R++  G   RPRL V RS +H+Y Q+IDD    TLA+AST+ K +  +    +G T   A  VG+ +A +  + G+T+V FDRGG+ +HGRI+ALADAARE GL+F
Sbjct:    5 TQFEKRRQRVRTALRQRAAG---RPRLSVHRSGRHIYAQLIDDAAGTTLAAASTLDKDVRGK----TGATTAAAADVGKRLAAAAKKAGVTQVVFDRGGFLFHGRIKALADAAREGGLEF 117          
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_PARDP (50S ribosomal protein L18 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  180 KREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533
            KRE    R  R+R K+    + RPRL V RS+K++ VQVIDD K  TLA+AS+++K    +L       +E A K+G  IA+   + G+ +V FDRGG+ +HG+I+ALADAARE GL+F
Sbjct:    5 KRELFQKRRLRVRNKLRKISDGRPRLSVHRSSKNISVQVIDDVKGVTLAAASSLEK----DLGVVGKNNVEAAAKIGAAIAERAKKAGVEEVIFDRGGFLFHGKIKALADAAREGGLKF 119          
The following BLAST results are available for this feature:
BLAST of CX299725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_HAMD53.447e-2046.6750S ribosomal protein L18 OS=Hamiltonella defensa ... [more]
RL18_SHEPA4.502e-2046.6150S ribosomal protein L18 OS=Shewanella pealeana (... [more]
RL18_SHEHH4.502e-2046.6150S ribosomal protein L18 OS=Shewanella halifaxens... [more]
RL18_RHOBA4.502e-2042.9850S ribosomal protein L18 OS=Rhodopirellula baltic... [more]
RL18_PSEE44.502e-2046.6150S ribosomal protein L18 OS=Pseudomonas entomophi... [more]
RL18_ORITB4.502e-2047.5050S ribosomal protein L18 OS=Orientia tsutsugamush... [more]
RL18_DEIRA4.502e-2045.1650S ribosomal protein L18 OS=Deinococcus radiodura... [more]
RL18_CHLCH4.502e-2043.7050S ribosomal protein L18 OS=Chlorobium chlorochro... [more]
RL18_SPHAL5.880e-2045.8350S ribosomal protein L18 OS=Sphingopyxis alaskens... [more]
RL18_PARDP5.880e-2047.0650S ribosomal protein L18 OS=Paracoccus denitrific... [more]

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Properties
Property NameValue
Genbank descriptionC07001F07SK NTLeaf1 Citrus clementina cDNA clone C07001F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299725 ID=CX299725; Name=CX299725; organism=Citrus clementina; type=EST; length=542bp
GAGAGAGAGAGAGAAAGAAAATGGCAGCTGGTGCGAGCTCAGTTTGGATG
CTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTCTC
AAAATTAGTGGCAAGCAGCAGGCCAGGGCCAGTACCGCCATCTCTTTTCA
TCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGCC
CGCCATTCTCGCATCAGAAAGAAGATTGATGGGACTCCAGAGAGGCCGAG
GCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGATG
ATACTAAGATGCATACACTTGCTTCAGCTTCGACGATGCAGAAGCCCATC
TCTGAGGAGCTTGACTATAGTTCTGGTCCCACGATTGAAGTTGCAAAGAA
GGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAGGGGATCACAAAAG
TAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCTA
GCCGATGCAGCTCGGGAACATGGTCTTCAATTCTAAGAACTA
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