CX299725
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_HAMD5 (50S ribosomal protein L18 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20 Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 3 Query: 180 KREDRTARHSRIRKKID--GTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 K+ R R +R R+KI GT RL + R+++H+Y Q+I T L +AS+++K I++E YS E A VG++IA+ L+KGI KV+FDR G+ YHGR+QALAD ARE GL F Sbjct: 3 KKLARIRRATRTRQKIKELGTT---RLVINRTSRHIYAQIISPTGSEVLVAASSVEKVINQEFKYSGNK--EAAAFVGKIIAERALKKGIIKVSFDRSGFQYHGRVQALADNAREAGLNF 117
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_SHEPA (50S ribosomal protein L18 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplR PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20 Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3 Query: 180 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 K+ R R R RKKI RL V R+ +H Y QVI + LA+AST +K ++E+L Y+ ++ AK VG+ +A+ +EKG+ VAFDR G+ YHGR+ ALADAARE GL+F Sbjct: 3 KKTSRLRRALRARKKIQELGVN-RLVVHRTPRHTYAQVISPENV-VLAAASTAEKAVTEQLKYTGN--VDAAKVVGKTVAERAIEKGVAVVAFDRSGFKYHGRVAALADAAREAGLKF 116
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_SHEHH (50S ribosomal protein L18 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplR PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20 Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3 Query: 180 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 K+ R R R RKKI RL V R+ +H Y QVI + LA+AST +K ++E+L Y+ ++ AK VG+ +A+ +EKG+ VAFDR G+ YHGR+ ALADAARE GL+F Sbjct: 3 KKTSRLRRALRARKKIQELGVN-RLVVHRTPRHTYAQVISPENV-VLAAASTAEKAVTEQLKYTGN--VDAAKVVGKTVAERAIEKGVAVVAFDRSGFKYHGRVAALADAAREAGLKF 116
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_RHOBA (50S ribosomal protein L18 OS=Rhodopirellula baltica GN=rplR PE=3 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20 Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 3 Query: 192 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 R R +R K+ G+ ++PRLC+ R+ KH QV+DD TL SAST K + +++ +G + A VG+++A+ E G+ V DRG YHGR++A ADAARE GLQF Sbjct: 11 RLRRRRHVRNKLRGSADQPRLCIQRTLKHFACQVVDDQAGKTLLSASTRDKTVRDQV--KAGGNCDAAALVGKLVAEKAAEAGVKTVKLDRGHNKYHGRVKAFADAAREAGLQF 122
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_PSEE4 (50S ribosomal protein L18 OS=Pseudomonas entomophila (strain L48) GN=rplR PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20 Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 3 Query: 180 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 K+ R R + R K+ E RLCVFRS++H+Y QVI LASAST+ K EL + I+ A KVG+++A+ G+++VAFDR G+ YHGR++ALADAARE GL+F Sbjct: 4 KKVTRLRRARKARLKMHEL-EAVRLCVFRSSQHIYAQVISADGSKVLASASTLDK----ELRDGATGNIDAATKVGKLVAERAKAAGVSQVAFDRSGFKYHGRVKALADAAREGGLEF 116
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_ORITB (50S ribosomal protein L18 OS=Orientia tsutsugamushi (strain Boryong) GN=rplR PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20 Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 3 Query: 174 RTKREDRTARHSRIRKKIDGTPER--PRLCVFRSNKHLYVQVIDD---TKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAARE 518 R ++ R +R+R KI PRL VF+SN+H+Y QVI++ K +T+A+AST+ K I E Y I+ AKKVG+++A+ KGIT V FDRGGY YHG I+ALAD ARE Sbjct: 2 RDSKDRFIIRKNRVRAKIAKLSGGCYPRLSVFKSNRHIYAQVIENIGSNKSNTIAAASTLDKDIFTESKYYKC-NIQYAKKVGQLLAERANSKGITSVVFDRGGYKYHGVIKALADGARE 120
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_DEIRA (50S ribosomal protein L18 OS=Deinococcus radiodurans GN=rplR PE=1 SV=3) HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20 Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 3 Query: 162 STRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 +T +R+ RT R R G R RL V+RS+KH+Y Q+IDD++ TLA+AS+ SG + A VG+ +A + EKGI +V FDRG Y YHGR++ALADAARE GL F Sbjct: 2 ATATTIRRKLRTRRKVRTTTAASG---RLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--------LKSGNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGGLDF 114
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_CHLCH (50S ribosomal protein L18 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplR PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20 Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 3 Query: 189 DRTARHSRIRKK----IDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 D+ AR +I+ + + GT +PRLC++RS +Y Q+IDD TL +ASTM K G + ++ VG+ IA+ L GIT V FDR G+ YHGR++ALAD ARE GL F Sbjct: 5 DKAARRQKIKDRSRVSVQGTASKPRLCIYRSLAEMYAQLIDDVNGKTLVTASTMTKNNKA----FEGTKSDASRIVGQQIAEKALAAGITNVVFDRNGFRYHGRVKALADGAREAGLIF 119
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_SPHAL (50S ribosomal protein L18 OS=Sphingopyxis alaskensis GN=rplR PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20 Identity = 55/120 (45.83%), Postives = 78/120 (65.00%), Query Frame = 3 Query: 177 TKREDRTAR-HSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 T+ E R R + +R++ G RPRL V RS +H+Y Q+IDD TLA+AST+ K + + +G T A VG+ +A + + G+T+V FDRGG+ +HGRI+ALADAARE GL+F Sbjct: 5 TQFEKRRQRVRTALRQRAAG---RPRLSVHRSGRHIYAQLIDDAAGTTLAAASTLDKDVRGK----TGATTAAAADVGKRLAAAAKKAGVTQVVFDRGGFLFHGRIKALADAAREGGLEF 117
BLAST of CX299725 vs. ExPASy Swiss-Prot
Match: RL18_PARDP (50S ribosomal protein L18 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplR PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20 Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 3 Query: 180 KREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 533 KRE R R+R K+ + RPRL V RS+K++ VQVIDD K TLA+AS+++K +L +E A K+G IA+ + G+ +V FDRGG+ +HG+I+ALADAARE GL+F Sbjct: 5 KRELFQKRRLRVRNKLRKISDGRPRLSVHRSSKNISVQVIDDVKGVTLAAASSLEK----DLGVVGKNNVEAAAKIGAAIAERAKKAGVEEVIFDRGGFLFHGKIKALADAAREGGLKF 119 The following BLAST results are available for this feature:
BLAST of CX299725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299725 ID=CX299725; Name=CX299725; organism=Citrus clementina; type=EST; length=542bpback to top |